Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05483 ATGGCAGAAGGAGAAGAGCGTATTGAGCTTAAGTTTCGTATATATGATGGAACGGATATAGCACATGATAGTTATCCAGCTTCTACTACAACAGTTGGTTCACTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGAAAAACCGTTATACCAAAGTCAGTCAATGATGTAAAACTTATACACGCCGGTAAAGTTTTGGAAAACACCAAAACGCTTGCTGATTCCAGAATAACTTTCGGTGACATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTCCTATAGCTAAAAAAAAGACAGAGAAGAAGAAGAAGAAGGAAAATATGCAAAAGACGAATTCATGCTCATGCACTATCCTGTAG 366 0.3962 MAEGEERIELKFRIYDGTDIAHDSYPASTTTVGSLKQKLVAEWPQGKTVIPKSVNDVKLIHAGKVLENTKTLADSRITFGDIPGAITMHVVVQPPIAKKKTEKKKKKENMQKTNSCSCTIL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05483 121 CDD Ubl_MUBs_plant 8 95 - -
Vivi6g05483 121 PIRSF MUB 1 121 IPR017000 -
Vivi6g05483 121 ProSiteProfiles Ubiquitin domain profile. 8 77 IPR000626 GO:0005515
Vivi6g05483 121 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 120 IPR040015 -
Vivi6g05483 121 MobiDBLite consensus disorder prediction 97 121 - -
Vivi6g05483 121 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 119 IPR039540 -
Vivi6g05483 121 Gene3D - 1 101 - -
Vivi6g05483 121 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05483 Vivi-Chr6 160402870 160406202 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05483 - - mtr:11423397 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05483 6 160402870 160406202 Vivi6g05483 6 160402870 160406202 ECH