Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05467 ATGAACACTTTCGCGGCGAGCTTCACCGCTCGAACATGCAACCCCCGCCGCGACGCAATTCCGTTAAAACACCGCTCCCTCCACCACTTCATCAACAGACGCGTCACGTTTCTCCCCACCAGAACAACTCTCCCATCTACAAGAATCGTTTGCATGGCGGAACCTTATCTGCTATTGAAGCTTGAATCTGCTGAGAAAACATGGAAAGAATTATCGGTGAAGCTTGCTGATCCAGACGTTGTTAATAATCCCAGTGAGTATCAGAAGTTAGCTCAATCGGTGTCCGAACTTGACGTGGTTGTAACCTTGTATACGAAATTTAAAGACTGTGAGAAGATGCTTGAAGAAACAAAAGCCTTAACAAAGGATGATGGCAATGATGAGGATATGGCGGAAATGATATCTTACGAAATTGAATCTTTGTCCAAGCAACTCGCAGAACTAGAGGACAAGCTGAAGGTTTTACTACTTCCCAGTGATCCTCTGGATGCAAGAAACATTATGCTTGAAGTAAGAGCAGGTACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATTTAGTGAAAGGAATTCTTGGAAGCATTCTGCCATTTCATGCTCTGAGGCAGAAAAAGGGGGATACAAAACTTACGTGATGGAGATAAAAGGAAATCGTGTCTATAGTAAATTAAAATACGAATCTGGTGTCCATCGAGTTCAACGCGTTCCTCTAACAGAAACACAGGGCCGCATACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGTTGATGAAGTTGAAATCGTAATTGACCCAAAAGATATTGAACTGACAACGGCACGTTCTGGGGGTGCAGGAGGCCAGAATGTTAATAAGGTTGAAACAGCAATTGATCTTGTTCATAAACCAACGGGAATCCGTATCTTTTGTACTGAACAAAGGACTCAGATTCAAAACAAGAATCTTGCTTTTCAGTTACTGCGAGCCAAACTATATGAGATAAAATCAAGGGAGCAGCAAGAGACAATACGAAATCAAAGAAAATCACAAGTTGGTACAGGAGCACGTTCCGAAAAAATTCGGACATACAATTTTAAGGAGAACAGGGTTACTGACCATAGATTGAAGAGGAACTTTGAGCTCACCTCTTTTCTAGCTGGTGACATAGAGGATGCTGTTCAGTCTTGTGTTTCACAGGAACAAAAGGAGCTTATGGAAGAACTTGTTGAGTCTATGGGTGCTTCTACTAAATGA 1260 0.4262 MNTFAASFTARTCNPRRDAIPLKHRSLHHFINRRVTFLPTRTTLPSTRIVCMAEPYLLLKLESAEKTWKELSVKLADPDVVNNPSEYQKLAQSVSELDVVVTLYTKFKDCEKMLEETKALTKDDGNDEDMAEMISYEIESLSKQLAELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSERNSWKHSAISCSEAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRIHTSTATVAIMPEVDEVEIVIDPKDIELTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLAFQLLRAKLYEIKSREQQETIRNQRKSQVGTGARSEKIRTYNFKENRVTDHRLKRNFELTSFLAGDIEDAVQSCVSQEQKELMEELVESMGASTK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05467 419 NCBIfam peptide chain release factor 1 53 411 IPR004373 GO:0006415|GO:0016149
Vivi6g05467 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Vivi6g05467 419 FunFam Peptide chain release factor 1 265 360 - -
Vivi6g05467 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Vivi6g05467 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Vivi6g05467 419 Gene3D - 163 273 - -
Vivi6g05467 419 FunFam Peptide chain release factor 1 335 414 - -
Vivi6g05467 419 Coils Coil 131 151 - -
Vivi6g05467 419 FunFam Peptide chain release factor 1 163 273 - -
Vivi6g05467 419 Gene3D - 51 161 - -
Vivi6g05467 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Vivi6g05467 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Vivi6g05467 419 Gene3D - 274 335 - -
Vivi6g05467 419 PANTHER LD18447P 52 413 - -
Vivi6g05467 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Vivi6g05467 419 Gene3D - 336 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05467 Vivi-Chr6 160290735 160297610 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05467 K02835 - gmx:100777225 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05467 6 160290735 160297610 Vivi6g05467 6 160290735 160297610 ECH