Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05441 ATGGTGGCAATGGCCATGGTTGCAGCGCAACAAAACCTGTTCTTCTCATCACAATCAAATTCCAGAATCTCAAGACCATGCATTCCCATTCCTCAGTTCATCTCCATTCCTAAACTCTCACGCAATACTAAGATTCAGTTTCCACTCATTTCATGCTCTTCTTCACAAACTCCAGAAACTCAAACTCAAACGGCTGAATCTTGTGTGAATTTGGGTCTTCAACTATTCTCCAGAGGAAAGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCGCTTTCTTTGAATCCAAATCCTGTAGAAGCACAAGCTGCTTTCTATAACAAAGCTTGCTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCTGAATGTCTTCGCACTGCTTTAAAAGATTACAATCTAAAGTTTGGCACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCGAGGCTGGGCGGGGAAGATGTTGGCTCTAGTTTTCGAAGAGATTTAAAACTCATCAGTGAAGTTCAAGCACCATTTCGCGGTATTAGGAAATTTTTTTACGTAGCATTTACGGCTGCTGCAGGAATATCATTGTTGTTTAATGTACCAAGGATATTGCGTGTAATTCAAGGAGGTGACGGTGCTCCTGATCTCTTGGAAACCGCTGGCAATGCCGCCATTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGAGAGTAAAAAAGAGGAGGAACAGCTTGCGCAAATATCCCGAAACGAGACACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGTGTAGTTGAACTTGTGCAGCTAAGAGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAGGAATCAGTGACTTCGGCTTTGCAAAGAGCAGATAGATTTCGCACCGATCTTGTTAGACGCGGTGTTTTGTTAGTTCCTGTCATCTGGGGAGAAGGTACAGAAACCAAAGTTAAAAAGAAAGGTTTTGGCCTTCGACCAAAGGCGGCCGAGGAACTTCCATCCATTGGGGAAGATTTTGAGAAGCGGACACAGTCCATAACAGCACAATCAAAACTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTGTATCGCCAGCCGAATGGGAACGGTGGATAAGAGATCAGCAGGAGTCTGAAGGAGTTCCCGTTGGCGAAGACGTGTACATAATACTGCGCCTAGACGGGCGAGTTCGGAGATCGGGGAAAGGTATACCTGATTGGGAGAAAATTGCGCTGGAGCTGCCGCCAATGGATGCAATTTTAAGCAAATTGGAAAGATGA 1332 0.4422 MVAMAMVAAQQNLFFSSQSNSRISRPCIPIPQFISIPKLSRNTKIQFPLISCSSSQTPETQTQTAESCVNLGLQLFSRGKVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAAECLRTALKDYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRKFFYVAFTAAAGISLLFNVPRILRVIQGGDGAPDLLETAGNAAINIGGIVVFVALFLWESKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKESVTSALQRADRFRTDLVRRGVLLVPVIWGEGTETKVKKKGFGLRPKAAEELPSIGEDFEKRTQSITAQSKLKAEVRFKAEVVSPAEWERWIRDQQESEGVPVGEDVYIILRLDGRVRRSGKGIPDWEKIALELPPMDAILSKLER 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05441 443 SUPERFAMILY TPR-like 60 131 IPR011990 GO:0005515
Vivi6g05441 443 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 6 441 - -
Vivi6g05441 443 SMART tpr_5 65 98 IPR019734 GO:0005515
Vivi6g05441 443 Pfam Low psii accumulation1 / Rep27 173 249 IPR021883 -
Vivi6g05441 443 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 52 158 - -
Vivi6g05441 443 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Vivi6g05441 443 Gene3D Tetratricopeptide repeat domain 52 150 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05441 - - gmx:100784188 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05441 6 160001245 160004540 Vivi6g05441 6 160001245 160004540 ECH