Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05434 ATGCTTCCTCTTTCCCTTCTTAAGACTGCACAAGGACACCCTATGTTGGTGGAGCTGAAAAATGGTGAGACTTATAATGGCCATTTGGTTAATTGTGATACATGGATGAATATTCATCTCAGAGAAGTTATTTGTACCTCAAAAGATGGAGATAGGTTTTGGAGGATGCCTGAATGCTACATACGGGGAAATACGATTAAGTATCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAGAGTCGTACAGACCGCAAGCCGCCTGGTGTTGGACGTGGTAGGGGAAGAGGTAGGGAGGATGGTGGTGCTGGTGCCGGTGCTGGTGGACGCCAAACAAAAGGCATGGGACGTGGTTTTGATGATGGTGGTGCTAGAGGAGCCGGAGGCCGAGGTAGGGGTGGCCCAAGTGGAAAGCCTGGAGGAAGCAGAGGTGCTGGGCGAGGTAGAGGTTGA 465 0.4946 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGGAGAGAGGRQTKGMGRGFDDGGARGAGGRGRGGPSGKPGGSRGAGRGRG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05434 154 SMART Sm3 5 71 IPR001163 -
Vivi6g05434 154 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2 130 IPR027141 GO:0006396
Vivi6g05434 154 Gene3D - 1 83 - -
Vivi6g05434 154 Pfam LSM domain 6 70 IPR001163 -
Vivi6g05434 154 MobiDBLite consensus disorder prediction 79 103 - -
Vivi6g05434 154 FunFam U6 snRNA-associated Sm-like protein LSm4 1 83 - -
Vivi6g05434 154 ProSiteProfiles Sm domain profile. 2 75 IPR047575 GO:0003723
Vivi6g05434 154 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Vivi6g05434 154 MobiDBLite consensus disorder prediction 79 154 - -
Vivi6g05434 154 SUPERFAMILY Sm-like ribonucleoproteins 3 127 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05434 Vivi-Chr6 159862326 159865004 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05434 K12623 - gmx:100815676 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05434 6 159862326 159865004 Vivi6g05434 6 159862326 159865004 ECH