Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05417 ATGGAAAAAATAGAACACACAACGGTTCACACAAACGGAATAAAAATGCACGTTGCATCAATCGGTTCAGGCCCAGTCATACTCTTCCTCCACGGCTTCCCTGAGCTTTGGTATTCATGGCGCCATCAGCTTCTCTCCCTCTCCGCCCTCGGGTACCGCGCCGTCGCGCCTGACCTTCGCGGTTACGGTGACACCGACGCGCCGTCTTCTCCTTCTTCTTACACCGCCCACCACATCGTCGGTGACCTCGTCGGACTTCTCGATGCTCTGGCTGTGGATCGGGTGTTTTTGGTTGGGCATGATTGGGGAGCTGCTATGGCGTGGTATTTTTGTTTGATGAAGCCTGATCGGGTTAAGGCTTTGGTTAATATGAGTGTGGTTTATCGGTCGAGGAATCCTGTTAGGAAGCCTGTGCAAACTATGAGGGCTTTGATGGGAGAGGATTATTATATGTGCAGGTTTCAGAAACCTGGGGAGGCTGAAGAAGAGTTTGCACGTGCCGGTGCTTCAAGAATAATAAAATCATTTCTTACACTGCGTGATCCACGTCCACTTTGTGTGCCAAAGGCGATAGGATTTGGAGGTTCCCCTAACACTCCTATAACTTTACCCAAATGGCTTTCTGAAGAGGATGTCAATTATTATGCTACCAAATTTGAACAAAGTGGCTTCACTGGTGGTCTAAATTACTATCGCGCTATTGACCTAACCTGGGAACTGATGGCACCATGGACTGGAGATCAGATAAAAGTACCTGTCAAGTTCATTGTGGGAGACCTGGACCTTACATATAACACGCCAGGCGTTAAGGAGTATATACATAACGGTGGCTTTAAGAGAGAAGTACCATACTTGCAAGAAATGGTTGTGATGGAAGGAGTAGCTCACTTTATAAATCAGGAAAAACCAGAAGAGATCAGTGCGCACATATATAACTTCATCAAGAAATTTTAA 954 0.4665 MEKIEHTTVHTNGIKMHVASIGSGPVILFLHGFPELWYSWRHQLLSLSALGYRAVAPDLRGYGDTDAPSSPSSYTAHHIVGDLVGLLDALAVDRVFLVGHDWGAAMAWYFCLMKPDRVKALVNMSVVYRSRNPVRKPVQTMRALMGEDYYMCRFQKPGEAEEEFARAGASRIIKSFLTLRDPRPLCVPKAIGFGGSPNTPITLPKWLSEEDVNYYATKFEQSGFTGGLNYYRAIDLTWELMAPWTGDQIKVPVKFIVGDLDLTYNTPGVKEYIHNGGFKREVPYLQEMVVMEGVAHFINQEKPEEISAHIYNFIKKF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05417 317 PRINTS Alpha/beta hydrolase fold signature 111 124 IPR000073 -
Vivi6g05417 317 PRINTS Alpha/beta hydrolase fold signature 97 110 IPR000073 -
Vivi6g05417 317 PRINTS Alpha/beta hydrolase fold signature 51 66 IPR000073 -
Vivi6g05417 317 Pfam alpha/beta hydrolase fold 25 179 IPR000073 -
Vivi6g05417 317 FunFam Epoxide hydrolase 2 317 - -
Vivi6g05417 317 PANTHER EPOXIDE HYDROLASE 5 315 - -
Vivi6g05417 317 SUPERFAMILY alpha/beta-Hydrolases 2 316 IPR029058 -
Vivi6g05417 317 Gene3D alpha/beta hydrolase 1 317 IPR029058 -
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 111 124 IPR000639 GO:0003824
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 251 267 IPR000639 GO:0003824
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 51 66 IPR000639 GO:0003824
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 291 313 IPR000639 GO:0003824
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 31 49 IPR000639 GO:0003824
Vivi6g05417 317 PRINTS Epoxide hydrolase signature 97 110 IPR000639 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05417 Vivi-Chr6 159648853 159652018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05417 1 317 Acyl Lipid Metabolism Gene Families AT4G02340 70.347 2.62e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05417 - - gmx:100799903 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05417 6 159648853 159652018 Vivi6g05417 6 159648853 159652018 ECH