Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05406 ATGGCATCTACTACTCCTTCCATGTCAGTTTCGTTGGAGTGTGTAAACGCGTGTAATTTGTGGAGAGGGGATGGAAATGGAAGACATGATTGTAGTTATCAATCGTGTGCTTGGAAATCTCCTAGGGTTCTTACTGGATTTCTTGCTACTACGGCTCGTCCTCATTACTTGTTGAATGGGCGGAATGGAAGAAGGAATGGATATAGTTTTGCATGTGAAGCCTTTAGTATAGTAAGTTCATATTCCGATGAAACACTTGGCAATGGCATCACACATCGTGATGGATTCTCTAGATCTATCTTTTCTAGATCTGCTCCTAGACAACGGAAATTATCTTGTTCTTCGGCTTTTTCGATGGATACTGCAAGCGAGTTTTCCCCTAGAAGCTTGTGGGAGGATCTTAAGCCCGTGATCTCGTATCTTCCTCCTAAAGAACTAGAGTTAGTCCATAATGCTTTTATGTTGGCATTTAAAGCTCATGACGGTCAGAAAAGGCGCAGTGGTGAACCCTTCATCATTCATCCAGTTGAGGTTGCTCGAATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGGTTACTTCATGACACGGTTGAAGATACAGATGTTGTGACTTTTGAGAGGATAGAGGAAGAATTTGGTGCTACGGTGCGCCACATTGTGGAAGGAGAGACCAAGGTGTCAAAGCTGGGAAAGTTGAAGTACAAGAATGAAAAAGATTCTGTTCAGGATGTGAAAGCAGAGGACCTAAGGCAAATGTTTCTGGCTATGACTGAGGAGGTCCGTGTTATTATCGTCAAATTAGCAGATAGGTTACATAACATGCGCACTCTATCACACATGCCTCCACATAAACAGGCTAGCATTGCGATGGAAACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTATCATTTATGTACACAAATCCTGAAGATTATGCGAAGGTGAAGAGAAGAGTTGCCGATTTATTCAAAGAACATGAGAAAGATCTTTTAGAGGCAAACAAAATATTGGTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTGACAGTTAAAACGGAAATCCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTACAAAGCTGTGGTCAAATCTAAAGGTTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTGTCATTATTAAACCAAAGTCGTGCATTGGGGTTGGGCCATTATGCAGTCCACAGCTGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATATGGACCCCAAATCCTAGATCTATGAAAGATTATATTGCAACCCCTAAACCGAATGGGTACAAGAGTCTTCATAGCACTGTGATTCCGTTTTTGTATGAGAGTATGTTCAGGCTTGAAATCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCAGCTCATTATAGTGGGAGAGAATTTGTTACTGGACTGGTTGGAAGTGCAGTGCCCAGCAGTAAAAGCTCAAGGGGGAAGACAGTGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCTATTAGGGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGTCGAGTCTTTGTATTTACACCCAGGGGAGAGATTAGGAATCTTCCTCAAGGTGCTACTGTAATTGATTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGCAACCTTGTTTCTCCTGCACGCGTGCTTGCTAATGCTGAAGTTGTAGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACATAAAATAATGAAATTTCTGAAGGAACAAGCTGCACTTTCCGCGGCTGATATCACTACAGAAGCAGTTAATGAATTTCTAAGTGATTCTGACAGAGATAGAGAATCTGAAAAACTGCCAAATGGTTCCGGTGGTTCTAAAGATAAGAGCGGGAAAACATTATTGAACGGTGTGGAAATATCAACTTCAGAAAGAAGTGAGACTGTCCTCCAGAGTAAGAATGGAAGTGCATGGACCCCTAAGCTCAATGGAAAACAAAATAAGCATGTGCATCATTTAAATTTGAATGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTTGCCAATATGATTCAAGTAAACAATCCAAAATACAAAGAAGTCCTGCCGGGCTTAGAAAGATGGAAAGCTCATAAAATTGCCTCGTGGCACAATATAGAAGGACACTCCATCCAATGGTTATCTATAGTATGCATAGATCGAAGAGGCATGATGGGGGAGGTCAGTACAGCATTGGCCACAGCAGACATAACCATATGTTCTTGTGTGGCTGAGATTGATCGAGGAAGGGGAATGGCTGTTATGCTATTTCATATAGAAGGAAATTTAGAAAATTTGGTGAATGCTTGCTCTAGAGTAGATCAAATACTGGGTGTTTTGGGATGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGAAAACCATGGCGTTCTCGAATGCTAG 2655 0.4177 MASTTPSMSVSLECVNACNLWRGDGNGRHDCSYQSCAWKSPRVLTGFLATTARPHYLLNGRNGRRNGYSFACEAFSIVSSYSDETLGNGITHRDGFSRSIFSRSAPRQRKLSCSSAFSMDTASEFSPRSLWEDLKPVISYLPPKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNEKDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDYAKVKRRVADLFKEHEKDLLEANKILVKKIQDDQFLDLLTVKTEIRAVCKEPYSVYKAVVKSKGLINEINQIAQLRVIIKPKSCIGVGPLCSPQLICYHVLGLIHGIWTPNPRSMKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAVPSSKSSRGKTVCLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIRNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLKEQAALSAADITTEAVNEFLSDSDRDRESEKLPNGSGGSKDKSGKTLLNGVEISTSERSETVLQSKNGSAWTPKLNGKQNKHVHHLNLNGKGDMMLQGNHVANMIQVNNPKYKEVLPGLERWKAHKIASWHNIEGHSIQWLSIVCIDRRGMMGEVSTALATADITICSCVAEIDRGRGMAVMLFHIEGNLENLVNACSRVDQILGVLGWSTGCSWPSLMENHGVLEC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05406 884 CDD TGS_RSH 566 624 IPR033655 -
Vivi6g05406 884 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Vivi6g05406 884 FunFam GTP pyrophosphokinase (RelA/SpoT) 557 631 - -
Vivi6g05406 884 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Vivi6g05406 884 MobiDBLite consensus disorder prediction 676 704 - -
Vivi6g05406 884 SUPERFAMILY TGS-like 552 624 IPR012676 -
Vivi6g05406 884 SUPERFAMILY HD-domain/PDEase-like 135 324 - -
Vivi6g05406 884 Pfam HD domain 152 309 - -
Vivi6g05406 884 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Vivi6g05406 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 8 879 - -
Vivi6g05406 884 SMART hd_13 167 287 IPR003607 -
Vivi6g05406 884 Gene3D - 558 633 IPR012675 -
Vivi6g05406 884 Pfam TGS domain 565 624 IPR004095 -
Vivi6g05406 884 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
Vivi6g05406 884 SUPERFAMILY Nucleotidyltransferase 326 499 IPR043519 -
Vivi6g05406 884 SUPERFAMILY ACT-like 797 863 IPR045865 -
Vivi6g05406 884 CDD HDc 169 300 IPR003607 -
Vivi6g05406 884 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Vivi6g05406 884 FunFam GTP pyrophosphokinase RelA 130 325 - -
Vivi6g05406 884 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Vivi6g05406 884 Gene3D Hypothetical protein af1432 130 324 - -
Vivi6g05406 884 MobiDBLite consensus disorder prediction 676 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05406 Vivi-Chr6 159444654 159453109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05406 181 496 EF-hand Containing Proteins AT3G17470 30.982 4.54e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05406 K00951 - gmx:100786637 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05406 6 159444654 159453109 Vivi6g05406 6 159444654 159453109 ECH