Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05403 ATGATGGAGTCGTGCGAGTGTATAGACACGCCGTATCCGCCAGACGAACTTCTTGTCAAGTATCAATATATTTCTGATGTTTTAATTGCGCTTGCGTATTTCTCGATTCCTGTGGAGCTTATTTATTTTGTTCAGAAGTCGGCTTTCTTTCCGTATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTTTGTGGGGCGACTCATTTTATAAACTTGTGGACGTTTTCTGCTCACTCTAAAGCGGTTGCTGTTGTGATGACGATTGCTAAGGTTTCATGTGCGATTGTGTCGTGTGCTACCGCGCTTATGCTTGTTCATATTATTCCGGATCTGTTGAGTGTTAAAACGCGTGAGTTGTTTCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGGCTTATTCTTACTCAGGAAGAAACCGGAAGGCATGTGAGAATGTTGACTCATGAGATTAGGAGCACGCTTGATAGGCATACGATACTCAAGACTACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCGTCAAGGAGTGGTCTTAATTTGCAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGATCTACTGTGCCAACAAACCTTCCTATTGTTAATGAAGTCTTCAATAGCCCGAGAGCTACGCGGATACCACACACTTGTCCACTTGCCAGGATAAGACCGCTTGTTGGAAGATACGTGCCCCCTGAAGTTGTTGCTGTTCGGGTGCCGCTTTTGCATTTGTCAAATTTTCAAATTAATGATTGGCCCGATCTTTCAGCAAAAAGCTTTGCAATCATGGTTCTCATACTCCCTACTGATAGTGCTAGAAAGTGGCGGGATCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGAGAGCCCGGGATCAACTCATGGAACAGAACGTTGCTTTAGATTTAGCTCGGCGAGAAGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTAATGAATCATGAGATGAGGACACCAATGCATGCAATTATAGCATTGTCATCGCTTCTTTTAGAGACAGAACTGACTCCAGAGCAGAGGGTTATGATAGAAACTGTTTTGAAGAGTAGTAATGTTTTGGCAGCACTTATTAATGATGTTTTAGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGGGAAAATCAACCTTCACGGTGTCTTAGGAGAGGTCATTGAACTGATAAAGCCTATTGCATCTGTGAAAAAATTACCTATTACTTTAATTCTGGCCCCTGATCTACCTAATCATGCCATTGGTGATGAAAAACGGCTTATGCAAACACTTTTAAATGTTGTGGGTAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATTAGAGCTTCTGTTGCAAAACCAGAATCCTTGCAGGATTGGCGACCTCCTGAGTTCTATCCAGCATCAAGTGATGGTCACTTCTATATAAGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTCCCCCAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAAAGTGGACCGGGTCGATCTAGCAGTGGCTCAGGTCTTGGGCTAGCCATTTGTAAAAGATTTGTAAATCTCATGGGTGGTCACATTTGGATGGAAAGCGAAGGACCCGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTAGCAATCCAGATCCATCTGATCATCAAGCGGCAAGCAGAGGCCAAGCATATAGTGGAAGCGGAGGCCTTGCTAGATTTAAACACTTAGTCAATGACGGCGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTAA 1908 0.4292 MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFNSPRATRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPDLSAKSFAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMGKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPNHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPGRSSSGSGLGLAICKRFVNLMGGHIWMESEGPDKGSTATFVVKLGICSNPDPSDHQAASRGQAYSGSGGLARFKHLVNDGDIGFSNRRNQRSF 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05403 635 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 622 - -
Vivi6g05403 635 Pfam GAF domain 159 308 IPR003018 GO:0005515
Vivi6g05403 635 FunFam Ethylene receptor 1 311 407 - -
Vivi6g05403 635 FunFam Ethylene receptor 1 409 591 - -
Vivi6g05403 635 ProSiteProfiles Histidine kinase domain profile. 351 588 IPR005467 -
Vivi6g05403 635 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
Vivi6g05403 635 Gene3D - 310 408 - -
Vivi6g05403 635 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 586 IPR036890 -
Vivi6g05403 635 Gene3D - 139 309 IPR029016 -
Vivi6g05403 635 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 586 IPR003594 -
Vivi6g05403 635 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Vivi6g05403 635 SMART HKATPase_4 456 588 IPR003594 -
Vivi6g05403 635 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Vivi6g05403 635 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Vivi6g05403 635 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Vivi6g05403 635 SMART gaf_1 159 318 IPR003018 GO:0005515
Vivi6g05403 635 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Vivi6g05403 635 CDD HisKA 342 405 IPR003661 GO:0000155|GO:0007165
Vivi6g05403 635 FunFam Ethylene response sensor 137 309 - -
Vivi6g05403 635 Gene3D - 409 591 IPR036890 -
Vivi6g05403 635 SUPERFAMILY GAF domain-like 159 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05403 Vivi-Chr6 159422365 159426622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05403 2 600 Miscellaneous Gene Families AT2G40940 77.295 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05403 K14509 - gmx:100802569 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05403 6 159422365 159426622 Vivi6g05403 6 159422365 159426622 ECH