Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04849 ATGGCCACCGCCACCGCCACCACCACTAAGGCTTTCCAAACACGACACACCAACTTCCTCATCTCCTCTAATCTCTACCGCCTCACCATACCTTCTCGATTCTTCCATCGCCAACCGAAACGCTTCGTTTTGACGCCGAGACTTGCGGTCAAAGCTTGCGCGATTAACGTTGAAGAGAAGAGCATTGCTGGAAAATCAGAAGCGTGGGGGAACGTTTCTGCTGTGTTGTTTGATATGGACGGTGTGCTTTGCAACAGTGAAGAACCTTCTAGAAGAGCTGCTGTTGATGTGTTTGCGGAGATCGGCGTTCAAGTCACCGTCGACGATTTTGTGCCGTTCACCGGAACCGGAGAAGCAAATTTTTTGGGAGGTGTTGCCTCTCTTAAGGGAGTTAAAGGATTCACTACTGACGCTCTAAAGAAGAGGTTCTTTGAAATATATCTGGACAAGTATGCAAAACCGGATTCCGGAATAGGATTTCCAGGTGCCCTTGACCTAGTTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCCGATCGAGTGAAGGTTGATGCAAATCTAGCTGCAGCTGGTTTGCCATTGTCATTGTTCGATGCAATCGTTTCTGCAGATGCTTTTGAGAATTTGAAACCGGCTCCTGATATTTTCTTAGCTGCGTCAAGGATATTGAATGTTGCCCCCAGTGAGTGTATTGTTATAGAAGACGCGCTAGCGGGAGTGCAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAACGACCACATTGTCAGATGAAGCTTTGGAGTCTGCTGGCCCAAATTTTATCCGAGATGACATAGGAAGTATTTCACTAGATGAGATCCTCAATGGTGACTCTATTGGATATAATAAGAGGATGCAGGGCACCGAAACACCAAATGATTTTGCTCAGTCTTCGTCTGATGTGCTTGCGGGAAAAATAGATGATGGAAATGGAAGAACTACCAGTGGTACTGATGAGGAAATTCTTTCAACTGGAGGGTTGCAGGGTTCGCGGCGAGATATACTGAGAGTTGGAAGTCTTGGGATTGCTATCTCTTGCCTTGTCTTCACTTTAAATAACTGGAAGGCAATGCAATATTCTTCCCCCCAAGCTATTTGGAATCTGTTATTTGGTGTTACCCAGCCATCCATGGAGTATAAAGCAGGCAACTCAAGATCTGATAGGATCCCGCAATTTGTGAACTACATAGCTGATCTGGAGAACAGGGAAAATGCTCAGGTTGTTCCAGAATTTCCGTCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTTCTGCTTGATTTCTGGACTTACTGTTGTATAAACTGTATGCATGTGTTGCCAGACCTAGATGCTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTTGTGGGTGTTCATTCTGCAAAGTTCGATAATGAGAAAGATTCTGAAGCCATCCGCAATGCAGTTCTACGCTATGACGTCACTCACCCGGTTGTCAATGACGGAGATATGTACTTTTGGCGGAAGTTGGGCATAAATTCATGGCCAACATTTGCTATCATTGGCCCCAACGGTAAACTCCTTGCCCAACTTGCTGGAGAAGGTCACAAGAAGGATCTTGATGATTTTGTGGCGGCGGCACTTCAATTTTATGGAAAACAGAACATGTTGGACAATACACCTATTACATTAAATTTAGAGAAAGACAATGATCCTCGTCTATTGATATCACCATTGAAGTTTCCCGGAAAGCTAGCTATTGATGTCCTCAACAACAGGCTTTTTATTTCTGACAGCAATCACAACCGCATAGTGGTCACCAACCTTGATGGGAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGTTCCTTTGATGAAGCCACCTTTAATCGTCCTCAGGGTCTTGCTTATAATGCAAAGAAAAATATCCTTTATGTTGCAGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGCTAATGAAAAAGTGCGTACTCTTGCTGGAAATGGGACCAAGGGTTCTGACTATGTTGGAGGAGGAAAAGGAGACACACAGCTCCTTAATTCACCATGGGATGTCTCTTTTCATCCATTTGAAGAAAAGATTTATATTGCCATGGCTGGCCAACATCAGATATGGGAGCACAATATATTGAGTGGAGTTACGAGAGCATTTAGTGGTGATGGTTATGAAAGGAATTTAAATGGATCAAGTTCTACAAGCACATCTTTTGCACAACCATCTGGTATTTCACTGTCTCAAGGTCTAATGGAGATATACGTAGCTGATAGTGAGAGTAGTTCAATTCGAGGTGTTGATCTGAAAACTGGAGGATCTCGTTTACTAGCTGGTGGCGACCCTATCTTCTCGGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAAGTACTTCTTCAACATCCACTGGGGGTTGTGAGTGGAAAGGATGGCGTAATCTATCTCACGGATAGCTACAATCACAAGATCAAGAAGTTAGATCCAGCTAGTAAAAGAGTTAGCACCGTTGCAGGAACAGGGAAAGCTGGTTTCAGAGATGGAATTGCCGTAACAGCTCAGCTCTCTGAACCATCAGGAATTGTTGAAGGGACCAATGGGAGACTATTCATAGCCGATACAAACAACAGCCTAATCCGATATCTAGATTTGAACTCTAATGAACTTGAACTTTGTACCTTGGAGCTTAAAGGAGTTCAACCTCCAAAACCGAAATCAAGATCTTTTAAACGTCTCAGGAGACGGCCAACTGCTGACACGGTGCCAATTACCATTGATGCCATTTCATCAGAGGAAGGGAACTTGTCTATTGAAATATCATTGCCAAATGAGTATCATTTCTCAAAGGAAGCTCGCAGTAGATTCAGTGTTGATATTGAACCTGAAGATGCTGTGAATATCAATCCTCTGGATGGACTCCTTAGTCCGGAAGGATCTGCAGTGCTTCACTTTAAGAGATCTTCTAACTCTGCTTCAATGGGAAGAATTAGTTGCAAGATTTACTATTGCAAGGAAGATGAGGTTTGTTTATACAAATCCTTGCTGTTCGAGGTACCCTTCCGAGAGGGAGATTTTGACACTGCCAAGACAGATGTCACTCTTGCCCATTTTGTGAAGCCAAAAGGTTTGACTAACAGCTTACTGCAGCCTATTGCTCCGTAG 3246 0.435 MATATATTTKAFQTRHTNFLISSNLYRLTIPSRFFHRQPKRFVLTPRLAVKACAINVEEKSIAGKSEAWGNVSAVLFDMDGVLCNSEEPSRRAAVDVFAEIGVQVTVDDFVPFTGTGEANFLGGVASLKGVKGFTTDALKKRFFEIYLDKYAKPDSGIGFPGALDLVSQCKSKGLKVAVASSADRVKVDANLAAAGLPLSLFDAIVSADAFENLKPAPDIFLAASRILNVAPSECIVIEDALAGVQAAKAAQMRCIAVTTTLSDEALESAGPNFIRDDIGSISLDEILNGDSIGYNKRMQGTETPNDFAQSSSDVLAGKIDDGNGRTTSGTDEEILSTGGLQGSRRDILRVGSLGIAISCLVFTLNNWKAMQYSSPQAIWNLLFGVTQPSMEYKAGNSRSDRIPQFVNYIADLENRENAQVVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYDVTHPVVNDGDMYFWRKLGINSWPTFAIIGPNGKLLAQLAGEGHKKDLDDFVAAALQFYGKQNMLDNTPITLNLEKDNDPRLLISPLKFPGKLAIDVLNNRLFISDSNHNRIVVTNLDGNFIVQIGSSGEEGLQDGSFDEATFNRPQGLAYNAKKNILYVADTENHALREIDFANEKVRTLAGNGTKGSDYVGGGKGDTQLLNSPWDVSFHPFEEKIYIAMAGQHQIWEHNILSGVTRAFSGDGYERNLNGSSSTSTSFAQPSGISLSQGLMEIYVADSESSSIRGVDLKTGGSRLLAGGDPIFSDNLFKFGDQDGIGSEVLLQHPLGVVSGKDGVIYLTDSYNHKIKKLDPASKRVSTVAGTGKAGFRDGIAVTAQLSEPSGIVEGTNGRLFIADTNNSLIRYLDLNSNELELCTLELKGVQPPKPKSRSFKRLRRRPTADTVPITIDAISSEEGNLSIEISLPNEYHFSKEARSRFSVDIEPEDAVNINPLDGLLSPEGSAVLHFKRSSNSASMGRISCKIYYCKEDEVCLYKSLLFEVPFREGDFDTAKTDVTLAHFVKPKGLTNSLLQPIAP 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04849 1081 Pfam NHL repeat 828 854 IPR001258 GO:0005515
Vivi6g04849 1081 Pfam NHL repeat 648 673 IPR001258 GO:0005515
Vivi6g04849 1081 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 170 183 IPR006439 -
Vivi6g04849 1081 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 220 240 IPR006439 -
Vivi6g04849 1081 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 72 83 IPR006439 -
Vivi6g04849 1081 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 202 218 IPR006439 -
Vivi6g04849 1081 Pfam Thioredoxin-like 445 539 IPR012336 -
Vivi6g04849 1081 FunFam Chloroplast protein HCF243 808 912 - -
Vivi6g04849 1081 CDD NHL-2_like 630 971 IPR045302 -
Vivi6g04849 1081 Gene3D - 567 734 IPR011042 -
Vivi6g04849 1081 Gene3D - 812 911 IPR011042 -
Vivi6g04849 1081 SUPERFAMILY NHL repeat 586 916 - -
Vivi6g04849 1081 Gene3D Putative phosphatase; domain 2 85 156 IPR023198 -
Vivi6g04849 1081 Gene3D Glutaredoxin 397 566 - -
Vivi6g04849 1081 FunFam NHL repeat-containing protein 2 400 564 - -
Vivi6g04849 1081 NCBIfam HAD-IA family hydrolase 200 258 IPR006439 -
Vivi6g04849 1081 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 97 1075 - -
Vivi6g04849 1081 FunFam NHL repeat-containing protein 2 577 733 - -
Vivi6g04849 1081 ProSiteProfiles Thioredoxin domain profile. 397 562 IPR013766 -
Vivi6g04849 1081 Gene3D - 74 271 IPR023214 -
Vivi6g04849 1081 SFLD Haloacid Dehalogenase 72 282 - -
Vivi6g04849 1081 SMART LY_2 585 627 IPR000033 -
Vivi6g04849 1081 SUPERFAMILY HAD-like 73 282 IPR036412 -
Vivi6g04849 1081 CDD HAD_BPGM-like 74 260 - -
Vivi6g04849 1081 SUPERFAMILY Thioredoxin-like 420 557 IPR036249 -
Vivi6g04849 1081 Pfam Haloacid dehalogenase-like hydrolase 75 258 IPR041492 -
Vivi6g04849 1081 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 72 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04849 Vivi-Chr6 152367392 152383710 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04849 - - gmx:100795843 1786.93