Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04835 ATGGCCAACACAATCACAACGACAAGTTTTCTCACACCGTTTCACTTTCATTCCCCTCGCTGTTCCATTCCCACACCCAATTCGGCTAAAGCTTTTACAGTTCCGAGGAGAAAAGCAATATCCTTAATCTTCTCAACTTACATTCTCTCCGACATTGGTACATCATTAGCCCAACAGCCACAACAACAACCCCGTAGGTTCCGAGAATATGTCGACACATTTGATGGCTATTCGTTTAACTACCCATCTAATTGGATTCAAGTTCGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAGAATATTTCGGTTGAAGTTTCTTCACCTTCGTCTTCGAAATTCAAGACTGTGGAAGACTTGGGTCCACCAGAAGAAGCTGGGAAGAAAGTTCTTGGTCAGTATCTTACTGAGTTTATGTCAACTAGAATTGGTGTTAAACGGGAGTCTAGTATTCTTAACACTTCTTCTAGAGTTGCTGATGATGGTAAATTGTACTATCAAGTTGAGGCGAATATAAAGTCGTATGCTAGTAACAATGAGCTTGCTGTTATGCCACAAGACAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACTTGTCTGTTCTAGGAGTTGAGAATAATCAACTGTATGAGTTGAGGTTACAGGTACCTGAAAATGTGTTTTTGGAGGAAGAGAACGAGCTTCGTCGAGTTATGGAGTCGTTTCGAGCGAATAAGGTTCTTCGTTAG 744 0.418 MANTITTTSFLTPFHFHSPRCSIPTPNSAKAFTVPRRKAISLIFSTYILSDIGTSLAQQPQQQPRRFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVEDLGPPEEAGKKVLGQYLTEFMSTRIGVKRESSILNTSSRVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFLEEENELRRVMESFRANKVLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04835 247 NCBIfam photosystem II reaction center PsbP 52 241 - -
Vivi6g04835 247 Pfam PsbP 66 241 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Vivi6g04835 247 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 61 242 - -
Vivi6g04835 247 PANTHER - 21 242 - -
Vivi6g04835 247 SUPERFAMILY Mog1p/PsbP-like 68 241 IPR016123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04835 Vivi-Chr6 152200894 152202087 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04835 - - tpra:123890988 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04835 6 152200894 152202087 Vivi6g04835 6 152200894 152202087 ECH