Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04824 ATGGGGACTGAAAATCCGGGTCATCCGAACTTCCCTTCGAGACCTAATTCCTTGCCGTTTGCGGCTGCACAGACTATGACACCTTTTTCATCAATGGGTCCTGTGGCTGGATCAGAGCCTCCTTCTTTCCAACCTACTCCTCCTGTACCTCCCCAAGCGCCTACACCGTTTTCATCGACTGGACCTGCTTTTAGACCAGGAGCACCCAGTTTTAGACCTACACCGCCGGGCAGGTTCAATGACCCATCAGTGCCTCCTCCTCCTCCATCATCCAATGTTCCGCCAGCGCCAGCTTCTGGACCTTTCCAGCATTTTACAGGACCTCCCTTTTCGTCGACTGTTCAGCCTCCTGTCATTCGAGCTCCACCCTTGGGGCAGCCATCAATTCATCAACATGCAAGTCAAGCACCTCCCTTTCCCTCATCTCTTCATCCTCAGCCGCAGATGCCTTATGTTCAAATGGGGTCTCCACCTATGGGTTCAAATGTTCCTCCTCCTCAATTTCAGCCATCTGTTCCTGGATATGCCCGTATGCAGCCTGGTGCTGAAATGCAAGCTCCACCTATAAGAAATTACGGACCTGCACCGCCTGCACCACCATCTCCCTTTGCACCTCATCAAGGAGGCTATGCTTCATCACTCCCGGTGGCTACTCCAATAGGTGTCCAGCCAACACAGCAACCAGGATATGCACCCCCTGCTGGTACCATTCAGGGCTTGACAGAAGACTTCAGTTCGCTCACAATGCAAACTCGTCCTGGAACAATGGATGCATTATTTGATGCTAAAGATCTTCCAAGGCCATTGGATGGTGATGTGGAGCCGAAGAATTTGGCGGAAATTTATCCCATGAATTGCAAACCCAGATATATGAGATTCACGACCAGTGCAATTCCCAGCTCCCAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAGTTGTATGTCCACTTGCTGAATCTCCGGATGGGGAAGAGGTGCCGATAATTAGTTTTGCTCCAGCTAGTGTTGTACGCTGCAGAAGATGCCGGACATATGTAAATCCTTATGTGACATTTACAGAAGCTGGAAGAAAGTACCGGTGCAATGTATGCACCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAGTTAGATGCCACTGGAAAAAGAGTCGATTTGGATCAGCGACCCGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCTGCTGAATATATGGTGCGGCCTCCTATGCCCCCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGCAGCCCAAACAATCAAGTCCTGCTTAGACGAGCTGCCTGGCTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGCACTATTCATTTTTATAACTTGAAGTCAACCTTGAATCAACCACAGATGTTTGTAGTCTCAGATCTGGATGACATATTTATTCCGCTCCCAGATGATCTTCTTGTTAACTTATCTGAGTCAAGAAGTGTGGTGGAAGCCTTCCTAGATAGTTTGCCAACTATGTTTCAAGATAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCTTTCATGGTTATGAGTACACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTTCCATCTCTCGGTGTTGGTCGCTTGAGGTTACGGGGAGATGATTCTCGGGTTTATGGGACAGATAAAGAACATGGACTGAGACTGCCCGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAGTACCAAATATCAGTAAATATATATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGAACTCTGGCGAAGTACACTGCTGGTCAAGTGAATTACTATCCAGCTTTCCACTCAGCCATTCATGGAGAGAAATTGAGTTATGAATTAAGGAGAGACCTCACTAGAGAGACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCCAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTAAGATCCACAGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTCGAAGAGACATTATTGACAACTCAGACTATTTATTTTCAAGTTGCATTGCTTTACACTGCATCCTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCTGTAGTTACAGACTTGGCGGATATGTATCGCCTGGCTGATACTGGTGCACTTGTCTCTCTATTTTCTAGGCTAGCTAATGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTGCAACTAAGAATTGTGAAAGCCCTCAAGGAGTATCGAAATCTTTATGCTGTGCAACATCGCTTGGCCAACAGAATGATATATCCCGAATCTTTAAAGTTCCTAATGTTGTATGGATTAGCTCTTTGTAGATCAATGGCTCTACGAGGAGGGTATGGTGATGTTCCATTGGATGATCGATGTGCAGCAGGACATACAATCATGATTTTACCAATAAAAAGATTGTTGAAACTTCTCTATCCTAGCTTGATTCGACTGGATGAATATCTTCTAAAGCCATCTGTACAAGCTGATGACTTAAAAAGCATTGAGAGAAGGTTACCTTTGGCTGGGGAGAGCTTAGACTCTAGGGGCCTTTATTTATATGATGATGGCTTCCGGTTTATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCAAAGAATTTACTCGGGGCAGACTTTGCAGCAGAATTATCAAAGGCTACTCTCAATGAGCATAATAATGAAATGTCAAGGAGGCTGATGAGGGTACTTGAAAAGTTAAGAAATGATGATCATGGATATTACCAGTTGTGCCATCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTTCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAATAGTGGGTATGCTGATTGGATGCTACAGATATCCCGACAAGTGCATCACTCATAA 3027 0.4483 MGTENPGHPNFPSRPNSLPFAAAQTMTPFSSMGPVAGSEPPSFQPTPPVPPQAPTPFSSTGPAFRPGAPSFRPTPPGRFNDPSVPPPPPSSNVPPAPASGPFQHFTGPPFSSTVQPPVIRAPPLGQPSIHQHASQAPPFPSSLHPQPQMPYVQMGSPPMGSNVPPPQFQPSVPGYARMQPGAEMQAPPIRNYGPAPPAPPSPFAPHQGGYASSLPVATPIGVQPTQQPGYAPPAGTIQGLTEDFSSLTMQTRPGTMDALFDAKDLPRPLDGDVEPKNLAEIYPMNCKPRYMRFTTSAIPSSQSLASRWHLPLGAVVCPLAESPDGEEVPIISFAPASVVRCRRCRTYVNPYVTFTEAGRKYRCNVCTLLNDVPSEYYAQLDATGKRVDLDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVAAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNLKSTLNQPQMFVVSDLDDIFIPLPDDLLVNLSESRSVVEAFLDSLPTMFQDNVNLESAFGPALKAAFMVMSTLGGKLLIFQNTLPSLGVGRLRLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISVNIYAFSDKYTDIASLGTLAKYTAGQVNYYPAFHSAIHGEKLSYELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTIYFQVALLYTASCGERRIRVHTMAVPVVTDLADMYRLADTGALVSLFSRLANEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSMALRGGYGDVPLDDRCAAGHTIMILPIKRLLKLLYPSLIRLDEYLLKPSVQADDLKSIERRLPLAGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLNEHNNEMSRRLMRVLEKLRNDDHGYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVHHS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04824 1008 Gene3D von Willebrand factor, type A domain 415 652 IPR036465 -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 190 204 - -
Vivi6g04824 1008 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 867 1006 IPR036180 -
Vivi6g04824 1008 SUPERFAMILY Helical domain of Sec23/24 750 857 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 68 96 - -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 218 232 - -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 1 32 - -
Vivi6g04824 1008 Pfam Sec23/Sec24 zinc finger 339 376 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vivi6g04824 1008 Pfam Sec23/Sec24 beta-sandwich domain 655 739 IPR012990 -
Vivi6g04824 1008 SUPERFAMILY beta-sandwich domain of Sec23/24 186 748 - -
Vivi6g04824 1008 PANTHER SEC24-RELATED PROTEIN 95 1005 - -
Vivi6g04824 1008 Gene3D - 285 397 - -
Vivi6g04824 1008 Gene3D Sec23/Sec24 helical domain 739 1005 - -
Vivi6g04824 1008 Gene3D Severin 858 986 IPR029006 -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 184 237 - -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 40 57 - -
Vivi6g04824 1008 CDD Sec24-like 413 654 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vivi6g04824 1008 Pfam Sec23/Sec24 trunk domain 413 649 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vivi6g04824 1008 SUPERFAMILY Zn-finger domain of Sec23/24 331 412 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vivi6g04824 1008 Gene3D - 286 738 - -
Vivi6g04824 1008 MobiDBLite consensus disorder prediction 1 146 - -
Vivi6g04824 1008 Pfam Sec23/Sec24 helical domain 750 853 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vivi6g04824 1008 FunFam protein transport protein Sec24D isoform X1 415 652 - -
Vivi6g04824 1008 SUPERFAMILY vWA-like 413 653 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04824 Vivi-Chr6 152041081 152050159 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04824 K14007 - gmx:100791083 1629.77