Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04768 ATGGGGCAAAAGCATTTTGCTATGGTGTTCTGTTTATGGGCTTTAACATGTTCTCTGCTTCCTTCTTTCTCCGTCGGAATGATGAGAGTTGGTTTGAAGAAGAGACCTCTCGATCTTCATAGTATTAATGCTTTTAGAAGAGAACAACGACTTAGATCAGGAAGACCGATGATGAGTGCACATGATCGGTACATTGGTAAGTCCAATGGTGAAGCTATAGTACCTTTGAGTGATTATATGAACGCTCAATATTTCGGTGAAATTGGAATTGGCACGCCGCCACAAAAATTTACTGTCATATTTGATACCGGTAGTTCCAACCTTTGGGTTCCATCATCCAAGTGTTACTTTTCTCTTGCCTGCTATACCCATAATTGGTACAAGGCGACGAAATCCAATACATATAACCAAAACGGAACATCGTGTAAAATAAACTATGGATCTGGATCAATATCTGGTTTCTTCAGTCAAGATCATGTTAAACTTGGCAATTCTATTGTCAAGAATCAGGACTTCATTGAGGCTACACGAGAAGGAAGTATTTCTTTTCTGGCAGGAAAGTTTGATGGAATATTTGGACTTGGATTTCAAGAGATCTCAGTTGCAAGAGCTTTGCCAGTATGGTACAATATGATGGAACAAAATCTTATAGGTGAGAAGGTGTTCTCTTTCTGGCTCAGCGGGAATCCTAATGCGAAAAAGGGTGGTGAATTAATTTTTGGTGGTGTGGACCCTAAGCATTTCAAAGGAAAACACACTTACGTTCCAGTTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTACATCGGAGGCTCGTCAACAGGTGTTTGTGAAGGTGGCTGTGCTGCTATTGTGGACTCCGGGACATCTCTGCTTGCTGGTCCAACTACTGTTGTGGCTGAAATCAACCACGCCATTGGAGCTGAAGGTGTTTTGAGTGTAGAATGTAAGTCCGTTGTTTCTCAATATGGGGAGCTGATATGGGATCTCCTAGTATCAGGGGTAAAACCTAGTGAGATATGTTCACAAGTTGGTTTATGTACTATTCGCCGGGATCAATCTATGAGTGCTGGGATTGAGATGGTGACCGAAAAGGAACATAGTGAATTGTCTGCAAAGGATACTCCTCTGTGTTCTTCTTGTCAGATGCTTGTTGTTTGGATTCAGAATCAACTAAAACAAAAGGCGAACAAGGAGAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGTCTTCCAAGTCCATCGGGTGAATCAGTGATAAACTGTAACGACATCTCCAAGATGCCAAACATTTCATTCACTATCGGAGACAAACCCTTCGTCCTCACACCAGAACAGTATATTCTAAGAACTGGAGAAGGCATTACCCAGGTCTGTCTTAGCGGGTTCATTGCTTTCGACATTCCTCCTCCAAAGGGTCCACTCTGGATTCTCGGTGATGTTTTCATGAGGGCATATCACACTGTTTTTGATTACGGAAATCTCCAAGTTGGTTTTGCTGAAGCTGCCTAG 1524 0.4186 MGQKHFAMVFCLWALTCSLLPSFSVGMMRVGLKKRPLDLHSINAFRREQRLRSGRPMMSAHDRYIGKSNGEAIVPLSDYMNAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSLACYTHNWYKATKSNTYNQNGTSCKINYGSGSISGFFSQDHVKLGNSIVKNQDFIEATREGSISFLAGKFDGIFGLGFQEISVARALPVWYNMMEQNLIGEKVFSFWLSGNPNAKKGGELIFGGVDPKHFKGKHTYVPVTEKGYWQIEMGDFYIGGSSTGVCEGGCAAIVDSGTSLLAGPTTVVAEINHAIGAEGVLSVECKSVVSQYGELIWDLLVSGVKPSEICSQVGLCTIRRDQSMSAGIEMVTEKEHSELSAKDTPLCSSCQMLVVWIQNQLKQKANKERVFNYVNQLCESLPSPSGESVINCNDISKMPNISFTIGDKPFVLTPEQYILRTGEGITQVCLSGFIAFDIPPPKGPLWILGDVFMRAYHTVFDYGNLQVGFAEAA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04768 507 Gene3D - 314 416 - -
Vivi6g04768 507 CDD phytepsin 74 505 IPR033869 GO:0004190
Vivi6g04768 507 ProSiteProfiles Peptidase family A1 domain profile. 84 504 IPR033121 -
Vivi6g04768 507 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 505 IPR001461 GO:0004190|GO:0006508
Vivi6g04768 507 SMART sapb_4 278 350 IPR008139 -
Vivi6g04768 507 ProSiteProfiles Saposin B type domain profile. 377 418 IPR008139 -
Vivi6g04768 507 Gene3D Acid Proteases 243 507 IPR021109 -
Vivi6g04768 507 FunFam Lysosomal aspartic protease 359 506 - -
Vivi6g04768 507 SUPERFAMILY Saposin 315 416 IPR011001 -
Vivi6g04768 507 FunFam Lysosomal aspartic protease 70 312 - -
Vivi6g04768 507 Pfam Eukaryotic aspartyl protease 83 506 IPR033121 -
Vivi6g04768 507 Pfam Saposin-like type B, region 2 318 350 IPR008138 -
Vivi6g04768 507 Gene3D Acid Proteases 28 242 IPR021109 -
Vivi6g04768 507 SUPERFAMILY Acid proteases 16 506 IPR021109 -
Vivi6g04768 507 Pfam Saposin-like type B, region 1 379 416 IPR007856 GO:0006629
Vivi6g04768 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190|GO:0006508
Vivi6g04768 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Vivi6g04768 507 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190|GO:0006508
Vivi6g04768 507 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Vivi6g04768 507 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190|GO:0006508
Vivi6g04768 507 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Vivi6g04768 507 ProSiteProfiles Saposin B type domain profile. 314 354 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04768 Vivi-Chr6 150970657 150974559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04768 K08245 - gmx:548009 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04768 6 150970657 150974559 Vivi6g04768 6 150970657 150974559 ECH
Vivi6g04768 6 150970657 150974559 Vivi1g05494 1 120752752 120757027 PCT