Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04733 ATGGCTTCAACGTTTTTGCCCCTGGCAACTCTATTTCTAGCTTTCTCTGCTTCTTTTCTCCAGATCGGTGAAGCGGAAACAGATCAACTTACCGCACAAAAGCTTAATTCTCATATTCTTCAGGAATCAATTGCTAAAGAGGTTAACGAAAACCCAGGGGCAGGATGGAAGGCTGCTATTAATCCTCGTTTCTCCAATTCCACGGTTGGACAATTTAAGCGCCTTCTTGGAGTCAAACAAACACCTAGGAATCTACTGAGTAGTATACCTGTTGTAACTCATCCAAAATCATCAAACTTGCCAAAGGAGTTTGATGCAAGGACAGCTTGGTCTCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTATCCGACCGTTTTTGCATTCATTTTGGCTTGGATGTACCCCTTTCTGTTAATGACCTTCTTGCATGTTGTGGATTTCTCTGTGGGTCTGGCTGTGATGGTGGGTATCCCATTGCTGCATGGCGATACTTAGCGCACCATGGCGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGATGTTCTCATCCCGGATGTGAGCCAGGATATCAAACTCCCAAGTGTGTTAAGAAGTGTGTAAAGGGAAACCAGCTTTGGAAGAAGTCAAAACACTATAGTGTCAAAGCATATAAGGTCAAGTCTGATCCCCAAAATATCATGGAAGAAGTTTATAAGAACGGACCGGTTGAAGTTGCATTCAGTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGATCTGCAATAGGCGGTCACGCAGTAAAGCTGATTGGGTGGGGAACAAGTGATGAAGGGGAGGACTATTGGCTTATTGCAAATCAGTGGAATACAAACTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGGACAAATGAATGTGGGATTGAAGAGGAAGTTACAGCTGGTTTGCCTTCTCCCAAAAATATTATTAGAGAAGTGACCGACACGGATGCTAACACTGACGTTTCCTTCTGA 1071 0.4332 MASTFLPLATLFLAFSASFLQIGEAETDQLTAQKLNSHILQESIAKEVNENPGAGWKAAINPRFSNSTVGQFKRLLGVKQTPRNLLSSIPVVTHPKSSNLPKEFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFGLDVPLSVNDLLACCGFLCGSGCDGGYPIAAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPGYQTPKCVKKCVKGNQLWKKSKHYSVKAYKVKSDPQNIMEEVYKNGPVEVAFSVYEDFAHYKSGVYKHITGSAIGGHAVKLIGWGTSDEGEDYWLIANQWNTNWGDDGYFKIRRGTNECGIEEEVTAGLPSPKNIIREVTDTDANTDVSF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04733 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 122 133 IPR000169 -
Vivi6g04733 356 SUPERFAMILY Cysteine proteinases 46 336 IPR038765 -
Vivi6g04733 356 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Vivi6g04733 356 PRINTS Papain cysteine protease (C1) family signature 122 137 IPR000668 GO:0006508|GO:0008234
Vivi6g04733 356 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Vivi6g04733 356 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Vivi6g04733 356 FunFam cathepsin B-like protease 2 33 341 - -
Vivi6g04733 356 Gene3D Cysteine proteinases 29 341 - -
Vivi6g04733 356 SMART pept_c1 100 335 IPR000668 GO:0006508|GO:0008234
Vivi6g04733 356 Pfam Papain family cysteine protease 100 334 IPR000668 GO:0006508|GO:0008234
Vivi6g04733 356 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 50 328 IPR013128 GO:0008234
Vivi6g04733 356 CDD Peptidase_C1A_CathepsinB 101 334 - -
Vivi6g04733 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04733 Vivi-Chr6 150341663 150345178 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04733 K01363 - gmx:100778103 613.224