Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi6g04709 | ATGGCTAATAACCCAACACAACCTAATGTTGGGTTCATCCCTTCAAACCCTGACAAGACTTCTTCAATTACCCCTCCACATAATTTTCCTCCACCTTTGTTACATTTGCACAAAGATCAAGGCTCACCTCATTCCAATTCACTATCACCTGCCAATGGGGCTGTTGCAAGTGGAAGTCCTGTTCCTCACATGAGTACTCCTCCTGGACCGCCTGTTTTTACGTCGCCGGTTCGGCCTGCGGCTGTTCCGTTTCGAACTTCGCCTGCTTCGCCTCAGCCGCCTGCTCTTTCTTCCGGTTCTTCTTTGCCAGCTTCGTCGCCACCGCAGTATACGAATGGATCGTTTGATTTGTTGCCACAAGTTTCTGATAGTGTTGGTGACCATGTTTCACTTGGGGAGCCTTCCTTTGTACTTTTTTCAGCTCATAAGGTATTGAAGCAGAAGAAGCAGGCTAATGTACCCAGTTTGGGTTTCGGGGCATTGGTCTCTCCTGGGAGGGAGGTGTCAACAGGCCCCCAGGTAATACAGCGTGATCCCCATCGCTGTCAGAGCTGTGGGGCATATGCAAATATATATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGAAAACTGAATGGAAGTGATGGTGAGTATATTGCACATAACAAGGAGGATCTTCACAGATTTCCTGAACTAGCTTCTCCAATGGTTGACTTTGTTCAAACTGGGACCAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCACTAGTAGTTCTTGTAATAGATGAATGTTTAGATGAACCTCACTTGCACCATCTTCAGAGCTCTTTGCATGCGTTCGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTATACTATACGGCCGTACTGTATCAGTGTATGACTTTGTAGAAGAGTCAGTTGCGTCTGCTGACGTGCTTCCCGGGGACAAGTCAGCAAGTCAGGAATCTTTGAAAACTTTGATTTATGGTACCGGTATATATTTGTCTCCCATGCATGCTTCACTGGCTGTAGCACATTCCGTGTTTTCATCATTGAGGCCATATAAGTTGAATGTACCAGAAGCTTCCAGAGATCGGTGCCTAGGAACCGCGGTTGAGGTTGCTCTTGCTATAATTCAGGGGCCATCTGCTGATCTGTCCAGAGGGGTAGTCAAAAGGTCAGGGGGCAATAGTAGAATTATTGTTTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTCAACCACCCTAATTATCCGTATATGGAAAAGACAGCATTAAAATGGATGGAGAATTTAGGTCGCGAGGCTCATCGACACAATGTATTGGTAGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGAGTTTTGGTTCTTCATGATGATTTTGGAGAAGCTTTTGGTGTTAATTTACAAAGGGCATCTTCCAGATCAGCAGGCTCCCATGGATTGTTAGAATTGCGGACATCAGATGATATTCTCATTACACAAGTTGTGGGTCCAGGGGAAGAGTCACACGTAGACACCCATGAAACATTTAAAAATGACACCGCACTTTATATCCAAATGCTAAGTGTTGAAGAGACACAGAGCTTTTCTCTCTCTATGGAAACCAAAGGAGATATCAAAAGCGATTATGTCTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAGGCTGATGTTTCAAGGGTTGTTACTGTAAGATTGCCTACAGTAGACAGTGTTTCGGGATATCTCGAGAGTGTTCAGGATGAAGTTGCTGCAGTCCTCATTGCAAAGAGAACTCTGTTACGAGCGAAAAACCAATCTGTTGCTGTTGAGATGCGGAAAACGATAGATGAAAGAATCAAGGATATTGGTCTAAAATTTGGCACCCAATTACCCAAATCTAAACTCCATTGCTTCCCAAAAGAGCTGTCTCTCTTACCGGAGCTCCTTTTCCATCTCAGGAGAGGGCCACTATTGGGATGTATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTAAATGCATCCTTTGATCTATCGCTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCAGCTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTTCTTGACCATGGCACCGATGTCTTCATTTGGCTGGGTGCTGAACTTGTAGCTGATGAAGGAAAAAGTGCCGCTGCTTTGGCTGCGTGCAGGACATTGGCTGAAGAGCTGACCGAGTTCCGTTTTCCAGCTCCTCGCATCCTCGCATTCAAGGAGGGTAGCTCGCAGGCTCGATATTTTGTCTCTCGTCTCATACCAGCTCACAAGGATCCACCTTATGAGCAGGAGGCAAGGTTCCCACAACTTAGGACATTAACATCAGAACAGCGAACAAAGCTGAAAAGCAATTTTGTTCACTTTGACGATCCGAGTTTTTGTGAATGGATGCGAAGTTTGAAGACCGTGCCACCACAACTGAGTTGA | 2577 | 0.4529 | MANNPTQPNVGFIPSNPDKTSSITPPHNFPPPLLHLHKDQGSPHSNSLSPANGAVASGSPVPHMSTPPGPPVFTSPVRPAAVPFRTSPASPQPPALSSGSSLPASSPPQYTNGSFDLLPQVSDSVGDHVSLGEPSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHNKEDLHRFPELASPMVDFVQTGTKRPGFVPVSDSRMSALVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFVEESVASADVLPGDKSASQESLKTLIYGTGIYLSPMHASLAVAHSVFSSLRPYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNVLVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASSRSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETKGDIKSDYVFFQFAIQYSNVYQADVSRVVTVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNQSVAVEMRKTIDERIKDIGLKFGTQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTSEQRTKLKSNFVHFDDPSFCEWMRSLKTVPPQLS | 858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi6g04709 | 858 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 711 | 852 | IPR036180 | - | |
| Vivi6g04709 | 858 | SUPERFAMILY | vWA-like | 260 | 496 | IPR036465 | - | |
| Vivi6g04709 | 858 | CDD | gelsolin_like | 711 | 802 | - | - | |
| Vivi6g04709 | 858 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
| Vivi6g04709 | 858 | CDD | trunk_domain | 253 | 496 | - | - | |
| Vivi6g04709 | 858 | Pfam | Sec23/Sec24 zinc finger | 179 | 217 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Vivi6g04709 | 858 | Gene3D | Severin | 725 | 822 | IPR029006 | - | |
| Vivi6g04709 | 858 | FunFam | Protein transport protein SEC23 | 725 | 822 | - | - | |
| Vivi6g04709 | 858 | Gene3D | - | 169 | 232 | - | - | |
| Vivi6g04709 | 858 | FunFam | Protein transport protein SEC23 | 170 | 232 | - | - | |
| Vivi6g04709 | 858 | MobiDBLite | consensus disorder prediction | 91 | 118 | - | - | |
| Vivi6g04709 | 858 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 30 | 607 | - | - | |
| Vivi6g04709 | 858 | Pfam | Sec23/Sec24 beta-sandwich domain | 505 | 596 | IPR012990 | - | |
| Vivi6g04709 | 858 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 142 | 854 | IPR037364 | - | |
| Vivi6g04709 | 858 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
| Vivi6g04709 | 858 | Pfam | Sec23/Sec24 helical domain | 610 | 706 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Vivi6g04709 | 858 | Gene3D | Sec23/Sec24 helical domain | 598 | 717 | - | - | |
| Vivi6g04709 | 858 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 169 | 241 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Vivi6g04709 | 858 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Vivi6g04709 | 858 | Pfam | Sec23/Sec24 trunk domain | 260 | 487 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Vivi6g04709 | 858 | Gene3D | von Willebrand factor, type A domain | 258 | 505 | IPR036465 | - | |
| Vivi6g04709 | 858 | SUPERFAMILY | Helical domain of Sec23/24 | 609 | 709 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Vivi6g04709 | 858 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi6g04709 | - | - | gmx:100781518 | 1491.09 |