Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04689 ATGGCAAACAAAAGGTTGGAGGGTAAGATAGCTATCATCACAGGTGCGGCCAGTGGAATTGGCGAAGAAGCTGTCAAATTGTTTGTTGAAAATGGAGCATATGTTGTTGCAGTAGATATTCAAGATGAATTAGGCCATCAACTTGTAGCTTCAATAGGCTCAGAAAAAGTAACATACCATCACTGTGATGTGAGGGATGAAAAACAGGTTGAAGAAACTATCAATTTCACATTGGAAAAATACGGTCACATAGATATCATGTTCAGTAATGCAGGAGTATTAGGCTCTTTATCCGGCGGGGGAGTGCTCGATGTCGATCTGAATGAATTCAAGAACACAATGGCTGTAAATGTTTATGGTGCAGCTGCTATAATCAAACATGCTGCTCGTGCCATGGTTGCAAAAAACATTCGTGGCAGCATCATATGCACTGCGAGTATTGGAGCTTCTCTTGGTGGAGCAGGTCCTAGTGGCTATACAGCATCAAAGCATGCTCTTTTGGGACTGGTAAGAGCAGCATGTAATGATCTTGGTGGTTATGGAATTAGAGTTAACAGTGTGTCCCCTTTCGGAGTCGCGACGCCTCTTGCATGTGCACCTTTCAATATTGAGACTGAATTTGTAGAAGCAATGATATGTTCCCAGGCTAATTTGAAGGGTGTTGTGTTGAAAGCTAGGCATGTTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGGTTATATCAGTGGCCATAACTTGGTTGTTGATGGTGGCGTCTCTGTGGTTCGTATGCTTACGGCTTCTCTTTGA 795 0.4302 MANKRLEGKIAIITGAASGIGEEAVKLFVENGAYVVAVDIQDELGHQLVASIGSEKVTYHHCDVRDEKQVEETINFTLEKYGHIDIMFSNAGVLGSLSGGGVLDVDLNEFKNTMAVNVYGAAAIIKHAARAMVAKNIRGSIICTASIGASLGGAGPSGYTASKHALLGLVRAACNDLGGYGIRVNSVSPFGVATPLACAPFNIETEFVEAMICSQANLKGVVLKARHVAEAALFLASDEAGYISGHNLVVDGGVSVVRMLTASL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04689 264 FunFam Short-chain dehydrogenase reductase 1 259 - -
Vivi6g04689 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 255 - -
Vivi6g04689 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Vivi6g04689 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Vivi6g04689 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 IPR002347 -
Vivi6g04689 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 257 IPR036291 -
Vivi6g04689 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 258 - -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 133 149 IPR002347 -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 218 238 IPR002347 -
Vivi6g04689 264 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Vivi6g04689 264 Gene3D - 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04689 Vivi-Chr6 149613659 149615624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04689 6 256 Acyl Lipid Metabolism Gene Families AT3G55290 26.894 4.60e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04689 - - gmx:100811279 364.385