Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04687 ATGCATAGGTTGGAGGGTAAGGTTGCTATAGTGACAGGAGCAGCAAGCGGAATAGGAGAAGACACAGTCAAGACATTTGTTGAAAACGGAGCATTCGTAGTTATTGCAGACATCAACGACGAATTAGGTCACCAACTCGTAACTTCAATCGGCTTAGAAAAAGTGAGTTACCACCACTGTGATGTGAGAGATGAAAAACAAGTTGAACAAACTATATCTTTCACCTTGGAGAAATACGGAACCCTAGACATTATGTTCAGCAATGCTGGAGTTCCAGGTCCTATGTCTAGCATACTAGAATTTGATTTGAATGAATTCGACAACACCATGGCTGTGAATATTCGAGGTGTGGCTGCAACTATTAAGCATGCTGCACGTGTCATGGTGGATCGAAAAATCCGAGGATCGATAATCTGTAATGCAAGTGTGGCTGCATCTGTTGCCGGATGTGGTGGTCATGATTATGTTACATCCAAACATGGTCTTATAGGACTTGTACGTTCAACATGTAGTGAGCTTGGAGCTTATGGGATTAGAGTTAATTCTATTTCACCTTATTTGGTTGTCACACCTCTTTCATGTAGGACACTTGGTAAGGAACAAGGTGAACTTGAAGCTAAGGGAAATGATTTTGCTAATTTGAAAGGAGTTACATTGAAGGGTAAGCATATTGCAGAAGCTGCTTTGTTTCTTGCTTCTGATGAATCTGCTTATATTAGTGGACATGACTTGGTTGTTGATGGTGGATTCTCCGTGATTAATACTTCTTTTCCTAATATTATTAAAAAATAG 792 0.4003 MHRLEGKVAIVTGAASGIGEDTVKTFVENGAFVVIADINDELGHQLVTSIGLEKVSYHHCDVRDEKQVEQTISFTLEKYGTLDIMFSNAGVPGPMSSILEFDLNEFDNTMAVNIRGVAATIKHAARVMVDRKIRGSIICNASVAASVAGCGGHDYVTSKHGLIGLVRSTCSELGAYGIRVNSISPYLVVTPLSCRTLGKEQGELEAKGNDFANLKGVTLKGKHIAEAALFLASDESAYISGHDLVVDGGFSVINTSFPNIIKK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04687 263 FunFam Short-chain dehydrogenase reductase 1 255 - -
Vivi6g04687 263 Gene3D - 1 263 - -
Vivi6g04687 263 Pfam Enoyl-(Acyl carrier protein) reductase 13 251 - -
Vivi6g04687 263 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 142 170 IPR020904 GO:0016491
Vivi6g04687 263 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 256 - -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 214 234 IPR002347 -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 176 193 IPR002347 -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 155 174 IPR002347 -
Vivi6g04687 263 PRINTS Glucose/ribitol dehydrogenase family signature 129 145 IPR002347 -
Vivi6g04687 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Vivi6g04687 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 IPR002347 -
Vivi6g04687 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 IPR002347 -
Vivi6g04687 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 252 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04687 Vivi-Chr6 149577595 149578433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04687 4 252 Acyl Lipid Metabolism Gene Families AT3G55290 29.771 1.38e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04687 - - tpra:123891074 416.772