Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04685 ATGTCAAAACAAAGGTTGGAGGGTAAGGTTGCTATAGTGACCGGAGGAGCAAGCGGAATAGGAGAAGAGACAGTCAAGACATTTGTCCAACACGGAGCATTCGTAGTTATAGCGGACATCAACGACGAATTAGGCCACCATCTCGCAACTTCAATCGGCTTAGAAAAAGTGAGTTACCACCACTGTGACGTGAGAGATGAAAAACAAGTTGAACAAACTGTATCCTTCACCTTGAAGAAATATGGCACCTTAGACATCATGTTCAGCAATGCCGGAATTCCAGGTCCTTTGTCTAGCATACTCGAATTTGATTTGAACAAATTCGACAACACCATTGCTGTGAATGTTCGAGGCGCGGCTGCAGCAATCAAGCATGCTGCTCGTGTCATGGTGGATCGAAAAATCCGAGGATCGATAATATGCACTGCTAGTGCGGCTGCCTCTGTTGCTGGAAGTGCTGGCCATGATTATGTCACATCCAAACATGGTCTTGTAGGACTTGTTCGTTCAACGTGTGGTGAGCTTGGAGGTTATGGGATTAGAGTGAATGCTATTTCGCCGTATTTAGTTGCTACACCTCTTGTATGTAGAGCACTGAAGATGGAAGTGAGTGAAGTTGAAGATAATGCAAATGATTGTGGTAATTTGAAAGGAGTTACATTGAAGAGTAAGCATATTGCAGAAGCTGCTTTGTTTCTTGCTTCTGATGAATCTGCTTATATTAGTGGACATGACTTGGTGGTTGATGGTGGCTTCTCTGTCATTAATACTTCTTTTCCTAGTATTGTCAAAAACTAG 798 0.4311 MSKQRLEGKVAIVTGGASGIGEETVKTFVQHGAFVVIADINDELGHHLATSIGLEKVSYHHCDVRDEKQVEQTVSFTLKKYGTLDIMFSNAGIPGPLSSILEFDLNKFDNTIAVNVRGAAAAIKHAARVMVDRKIRGSIICTASAAASVAGSAGHDYVTSKHGLVGLVRSTCGELGGYGIRVNAISPYLVATPLVCRALKMEVSEVEDNANDCGNLKGVTLKSKHIAEAALFLASDESAYISGHDLVVDGGFSVINTSFPSIVKN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04685 265 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 258 - -
Vivi6g04685 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Vivi6g04685 265 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Vivi6g04685 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Vivi6g04685 265 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Vivi6g04685 265 FunFam Short-chain dehydrogenase reductase 1 257 - -
Vivi6g04685 265 Gene3D - 1 265 - -
Vivi6g04685 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Vivi6g04685 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Vivi6g04685 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04685 Vivi-Chr6 149551541 149552839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04685 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 28.958 1.08e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04685 - - tpra:123891074 403.675