Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04678 ATGGGTCTGTCATTCACGAAGCTTTTTAGCCGGTTGTTTGCGAAGAAGGAGATGAGGATACTTATGGTAGGTCTCGATGCGGCTGGTAAGACCACCATTCTTTACAAGCTCAAACTTGGAGAAATTGTCACCACCATTCCCACCATCGGGTTCAATGTGGAAACGGTTGAATATAAGAACATCAGTTTTACTGTCTGGGATGTTGGAGGCCAGGACAAGATTCGTCCTTTGTGGAGACATTATTTCCAAAATACACAAGGACTTATTTTTGTGGTTGATAGCAATGATCGAGATCGTGTTGTTGAAGCTAGGGATGAGCTGCACAGGATGTTAAATGAGGATGAGTTGAGAGATGCCGTGCTTCTAGTTTTTGCTAACAAACAAGATCTTCCAAATGCTATGAATGCTGCTGAAATTACCGATAAGCTTGGACTTCATTCACTTCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCTACCTCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATCGCAAACAAGGCATAG 546 0.4341 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04678 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Vivi6g04678 181 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Vivi6g04678 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Vivi6g04678 181 FunFam ADP-ribosylation factor 1 1 181 - -
Vivi6g04678 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 SMART rab_sub_5 18 180 - -
Vivi6g04678 181 Gene3D - 4 181 IPR027417 -
Vivi6g04678 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 SMART arf_sub_2 1 181 - -
Vivi6g04678 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Vivi6g04678 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Vivi6g04678 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04678 Vivi-Chr6 149396341 149399165 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04678 K07937 - nnu:104611227 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04678 6 149396341 149399165 Vivi6g04678 6 149396341 149399165 ECH
Vivi6g04678 6 149396341 149399165 Vivi1g05391 1 117992951 117995379 PCT