Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi6g04611 | ATGTCTTCCTCCCGTCGTAACACCAACGGCCGATCACCTCTCGTCAATCCACAGCGTCAAATCACCGCATTCTTCACCAAAACCACTTCCCCTTCTCCTATTCTCTCCAAAACCAATCCAAAACCTAACCCTAACCCTAACCCTAGCATAAACCCTAACCCTAGTCCTTCCCTAACCACACCTTCACCTCTCAATTCCAAACCACACAAACCTCGTCTCGTTATCGGCGCTTCTCCTACACCAACAGATTCAACACCGCCTCCACATTCTCCTTTCATCGGCAAACGGATCAAGGTTTATTGGCCGTTAGATGATGCTTGGTACGAAGGTATTGTCAAATCGTTTGACAGCGTTACCTCCAAGTATCGGATTCGCTACGATGATGACGAAGAGGAATGCGTTGATCTATCCAAGGAGAAATTTGAGTGGCTTCCGCTTCCGGATCCTTCTTCGAGGAAGCTTAAACGTTTGCGTCGCGGTTCGTCTCCGATTAGGAAGATGGTGATTGAGGATATTGAGGTAGATGGAAGTCCCAAAGAGGAAACGGAAGAGCTTGATGATGACGGTGATGGTGATGATGATTCGGGAGATGAAGATTGGGGGAAGAATGCTGTATTGGAGGACGCTGGTGATGATGAGGAAGAGGATATGGAGCTGGAGGAAGAAAATGAGGTTGTTGTAGAAAGTGCTAAAGGAAAGAGTGGCGGCAAGGTTGAGCCGAAGAAGCGAAAACATGGTGAAGCATTGAAATTGGAGCCTATGAAAAAGAGTAAGAGTGGAAATGAAGTTAATAGTGTAGCTGTTAAGCTATCACCATTGGAGTCTATGAAAAAGAGCAAGAGTGGAAATGAAGTTAGCAGTGTGGCTCTTAAGCTCTCACCATTGGAGCCTGTGAAAAATTTGGAGGTTAAAAAGACATTGGATGTTGCAGTCAATGTTGCAACTGATGATGCGGCTGAAAGGTCTGAAAGATTTGCGCACCGTGAAGCTCAGAAGTTTCGCTTTCTAAGAGAAGATCGCAGGGATGCCAAGCGAAGGCGTCCAGGAGATGAAAATTATGACCCAAGAACTCTATATTTGTCTCCAGATTTTGTGAGGAATTTGTCAGATGGCCAGAAACAATGGTGGGACTTCAAGTCTAAACACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTATGAAATGGATGCACATATAGGAGCAAAAGAGCTTGACTTACAATATATGAAGGGAGATCAACCTCACTGTGGATTTCCAGAGAAAAATTTCTCAGTAAATATAGAGAAACTAGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTTGAGCTTCGTCGCAAAAAGAACGGCTCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACATTAACGGATGGGGAGTTTATGGCAACACATCCTGAAGCTGCATATTTAATGGCATTGACTGAGTGCCATGAGAACCATCCAAATGAAATTTCAGAGCGCACCTACGGTGTTTGTGTAGTTGATGTTGCCACAAGCAGAGTCATTCTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCCTTGTGTTCTATCTTGTCTGAGATCAGACCAGTTGAAATTGTGAAACCTGCTAAACTACTAAGCCCTGAAACAGAAAGGGTACTGCTGAAACACACCAGAAACCCTCTAGTGAATGAGTTAATTCCAACTGTGGAATTCTGGGATGCTGATAAAACTTTGGATCAATTGAAGAGAATTTATGGGCACAATAATGATGTTAGTGTTCAAGATGGTGGGTTAGATTGTCTTCCAGATGTTTTACTGGAGCTGGTAAAAACAGGACAAGACAGCAGTAGTGCACTCTCAGCACTTGGTGGTGCTATCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGATTCTTAGATTTGCGCAGTATGAGTTGCTTCCATGTTCTGTTTTCGGGGGTCTTGCTTCAAAACCTTACATGGTTCTTGATGCAGTAGCCCTAGAGAATCTTGAGATATTTGAGAATAACAGAAATGGAGACTCTTCAGGCACGCTCTATGCTCAATTAAACCAATGTGTTACGGCATTTGGGAAAAGACTGCTAAAGTCATGGCTTGCAAGACCGTTATGTCGTGTTGAGTCAATTAAGGAACGCCAGGAGGCCGTTGCAGGTTTGAAGGGAGTGAATCTACCTCATGCGCTAGAATTTCGAAAAGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCACGGGTGTTATCTTCAAGTGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCAGCAAAGAAACAATTGCAAGAGTTTATTTCAGCTCTGCGCGGTCTTGAACTAATGGCACAAGCTTGCTTGGCACTCGGTGGCATTTTAAATGATGTCGAATCTAGACAACTTAGTTATCTTTTAACACCTGGCAAAGGTCTTCCTGATGTCAGCATGGATCTGAATCATTTCAAAGGTGCTTTTGATTGGGTGGAAGCCAATAGCTCCGGCCGTATAATACCTCATGATGGAGCTGACATAGAGTATGATTCAGCTTCTAAGGCAGTTAGAGAGATTGAGTCCAGTTTATTAAAGCATCTCAAGGAACAAAAGGAATTACTTGGATGCACATCAATCTCTTATGTCGATGTTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTGTCTCAGAATATTCCTCATGATTATGAGCTGCGTTCATCCAAGAAAGGTTTCTCTAGGTATTGGACTCCAGATATTAAAGTATTTTTGAAAGAGCTCTCCCATGCTGAATCTGAAAGGGAGACCTTATTGAAAAGTACATTTCAGAGACTGATTGAGCGTTTTTGTGAACATCATACTCAGTGGAAGCAGCTGGTGCATGCAACTGCTGAATTGGATGTTTTGATCAATTTAGCCATTGTCAGTGATTACTATGAAGGACCAACATGCAGACCAAATTTTGTTGGGACGTCATGTACAAATGACGCGCCATACATCTATGCTAAAGGGCTTGGACACCCAGTTCTTAGGAGTGATTCCCTAGGAAAAGGTGCCTTTGTACCTAATGACATAACCATTGGTGGTCCAGATCAGGCCTCCTTTATTCTTCTTACTGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGGCAAGTTTGCATGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCTGCAGAAAGTTTTGAATTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGAAACTCATTGGTGGCTCTGGATGAGCTTGGTCGTGGGACCTCAACATCTGATGGACAGGCTATTGCGGAATCTGTATTAGAACATCTTGTACGAAGGGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGATTAGCTATAGATCATGACAAAGATCCCAAGGTCTGTCTTTCTCACATGGCATGCCAAGTTGGTAGTGGAAATGAAGGTTTGGACGAAGTCACCTTTCTTTACAGGTTGACTCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCCGGACTACCTACTTCTGTGCTTCAGAAGGCCGCTGCTAAGTCCAAAGAATTTGAGGCTAGTTATGGAAAATACAGAAACGTGACTTCTGAAACAAACTGTTTGAATCAAAGTTGGGTCGATAAGATAATAGGAGTGGTACAAAAATTGAATAATGCTGCTACAAATTTGAGTTGTGAGGAGGCCGTTTCTGATCGTTCCCTAATGAAGCTTCAACATAAAGCAAGAAAGCTTCTACAACAATGTTAA | 3948 | 0.4316 | MSSSRRNTNGRSPLVNPQRQITAFFTKTTSPSPILSKTNPKPNPNPNPSINPNPSPSLTTPSPLNSKPHKPRLVIGASPTPTDSTPPPHSPFIGKRIKVYWPLDDAWYEGIVKSFDSVTSKYRIRYDDDEEECVDLSKEKFEWLPLPDPSSRKLKRLRRGSSPIRKMVIEDIEVDGSPKEETEELDDDGDGDDDSGDEDWGKNAVLEDAGDDEEEDMELEEENEVVVESAKGKSGGKVEPKKRKHGEALKLEPMKKSKSGNEVNSVAVKLSPLESMKKSKSGNEVSSVALKLSPLEPVKNLEVKKTLDVAVNVATDDAAERSERFAHREAQKFRFLREDRRDAKRRRPGDENYDPRTLYLSPDFVRNLSDGQKQWWDFKSKHMDKVLFFKMGKFYELYEMDAHIGAKELDLQYMKGDQPHCGFPEKNFSVNIEKLARKGYRVLVVEQTETPEQLELRRKKNGSKDKVVRREICAVVSKGTLTDGEFMATHPEAAYLMALTECHENHPNEISERTYGVCVVDVATSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSPETERVLLKHTRNPLVNELIPTVEFWDADKTLDQLKRIYGHNNDVSVQDGGLDCLPDVLLELVKTGQDSSSALSALGGAIYYLKQAFLDEQILRFAQYELLPCSVFGGLASKPYMVLDAVALENLEIFENNRNGDSSGTLYAQLNQCVTAFGKRLLKSWLARPLCRVESIKERQEAVAGLKGVNLPHALEFRKALSKLPDMERLLARVLSSSDASGRNANKVVLYEDSAKKQLQEFISALRGLELMAQACLALGGILNDVESRQLSYLLTPGKGLPDVSMDLNHFKGAFDWVEANSSGRIIPHDGADIEYDSASKAVREIESSLLKHLKEQKELLGCTSISYVDVGKDTYLLEVPENLSQNIPHDYELRSSKKGFSRYWTPDIKVFLKELSHAESERETLLKSTFQRLIERFCEHHTQWKQLVHATAELDVLINLAIVSDYYEGPTCRPNFVGTSCTNDAPYIYAKGLGHPVLRSDSLGKGAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCMAVILAQVGADVPAESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRRVQCRGLFSTHYHRLAIDHDKDPKVCLSHMACQVGSGNEGLDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSKEFEASYGKYRNVTSETNCLNQSWVDKIIGVVQKLNNAATNLSCEEAVSDRSLMKLQHKARKLLQQC | 1315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 208 | 223 | - | - | |
| Vivi6g04611 | 1315 | FunFam | DNA mismatch repair protein | 326 | 489 | - | - | |
| Vivi6g04611 | 1315 | Gene3D | - | 1008 | 1284 | IPR027417 | - | |
| Vivi6g04611 | 1315 | SUPERFAMILY | Tudor/PWWP/MBT | 91 | 134 | - | - | |
| Vivi6g04611 | 1315 | Gene3D | DNA repair protein MutS, domain I | 326 | 488 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | SUPERFAMILY | DNA repair protein MutS, domain I | 357 | 480 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | FunFam | DNA mismatch repair protein | 842 | 973 | - | - | |
| Vivi6g04611 | 1315 | Pfam | MutS domain V | 1061 | 1251 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | PANTHER | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | 372 | 1259 | IPR045076 | GO:0005524|GO:0006298|GO:0030983|GO:0140664 | |
| Vivi6g04611 | 1315 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1019 | 1252 | IPR027417 | - | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 165 | 263 | - | - | |
| Vivi6g04611 | 1315 | SUPERFAMILY | DNA repair protein MutS, domain III | 679 | 1003 | IPR036187 | - | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 37 | 61 | - | - | |
| Vivi6g04611 | 1315 | CDD | Tudor_Agenet_AtEML-like | 93 | 143 | - | - | |
| Vivi6g04611 | 1315 | Pfam | MutS domain I | 372 | 484 | IPR007695 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | Pfam | MutS domain III | 682 | 997 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | SMART | mutATP5 | 1057 | 1249 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | SMART | DNAend | 696 | 1037 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | Gene3D | MutS, connector domain | 493 | 668 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | Gene3D | - | 842 | 973 | - | - | |
| Vivi6g04611 | 1315 | Pfam | MutS domain II | 495 | 647 | IPR007860 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | PIRSF | Msh6 | 1 | 1301 | IPR017261 | GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | SMART | TUDOR_7 | 89 | 147 | IPR002999 | - | |
| Vivi6g04611 | 1315 | Gene3D | - | 676 | 997 | - | - | |
| Vivi6g04611 | 1315 | Coils | Coil | 203 | 223 | - | - | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 224 | 257 | - | - | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 176 | 197 | - | - | |
| Vivi6g04611 | 1315 | FunFam | DNA mismatch repair protein | 1008 | 1280 | - | - | |
| Vivi6g04611 | 1315 | SUPERFAMILY | DNA repair protein MutS, domain II | 490 | 691 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | Gene3D | - | 90 | 140 | - | - | |
| Vivi6g04611 | 1315 | Pfam | MutS family domain IV | 866 | 957 | IPR007861 | GO:0005524|GO:0006298|GO:0030983 | |
| Vivi6g04611 | 1315 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi6g04611 | Vivi-Chr6 | 148189399 | 148197395 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi6g04611 | K08737 | - | gmx:100811104 | 1856.65 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi6g04611 | 6 | 148189399 | 148197395 | Vivi6g04611 | 6 | 148189399 | 148197395 | ECH |