Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04552 ATGAGAAACATGTTTAATCCTGCAATAGCTCTAAGCTTCCTCTCCCTCCTGTTACTCTCCCCAGTTACATTCTCTGAGAAATGCAACCCACAAGACAAGAAAGTTCTCCTCAAAATCAAACAAGAACTCAACAACCCTTACCTTCTAGCCTCATGGGACCCAAAAACAGATTGTTGTGACTGGTACTGTATCGAGTGCGACATCAAAACTCACCGTATCACCGCCTTAATCATACAAGACTCCGTACCATACACAAATCTCTCCGGCCAAATCCCTCCTTCCGTCGGTGACCTCCCTTATCTCCAGAATCTCGAATTCCACAAACTTCCCAGACTCACCGGCCCAATCCAACCCACCATAGCCAAGCTCAAAAACCTCAAATATCTTTTCATTGAATACACCAATGTCTCAGGCCCAATACCCTCTTTCTTGTCTCAACTCACAAACCTCCAGCTTCTTCATCTTTCCACCAACAACCTCACCGGTTCAATCCCCAGTTCACTTTCACAATTACCTAACCTCGAGTCCTTACACTTAGACAGAAACAAGCTCACAGGCCCAATTCCAGAATCATTCGGTTCATTCAAAAAGCCCGGGCCAGACATCATCCTATCTCACAACCAGCTTTCTGGGCCTATTCCAGCTTCATTAGGCCAGATAGACCCAGAGAGAATAGACTTATCCCGAAACAAGCTTGAAGGTGATGCATCTGTGCTTTTCGGTAGCAAGAAAAGGACACAAATACTTGATGTTTCAAGGAACTTGCTGTCGTTTGATTTGTCAAAGGTTGATTTTCCGAAACAGAGTTTGATATGGTTGGATCTGAATCATAACAAGATATATGGGAAGATTCCGGTGGCATTGACGAAAGTGGAAAATTTGCAGCAGTTTAATGTGAGCTATAACCTGTTGTCTGGTCAGATACCGCAGGGTGGTGAATTGCAGAAGAGGTTTGATGTTTATGCTTATTTTCACAATAAGGGTTTGTGTGGGTCACCACTTCCACCATGCAAAGTGATTAAGGAGATGGCTTAG 1035 0.4396 MRNMFNPAIALSFLSLLLLSPVTFSEKCNPQDKKVLLKIKQELNNPYLLASWDPKTDCCDWYCIECDIKTHRITALIIQDSVPYTNLSGQIPPSVGDLPYLQNLEFHKLPRLTGPIQPTIAKLKNLKYLFIEYTNVSGPIPSFLSQLTNLQLLHLSTNNLTGSIPSSLSQLPNLESLHLDRNKLTGPIPESFGSFKKPGPDIILSHNQLSGPIPASLGQIDPERIDLSRNKLEGDASVLFGSKKRTQILDVSRNLLSFDLSKVDFPKQSLIWLDLNHNKIYGKIPVALTKVENLQQFNVSYNLLSGQIPQGGELQKRFDVYAYFHNKGLCGSPLPPCKVIKEMA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04552 344 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Vivi6g04552 344 FunFam Polygalacturonase inhibitor 1 27 338 - -
Vivi6g04552 344 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vivi6g04552 344 SUPERFAMILY L domain-like 28 337 - -
Vivi6g04552 344 PANTHER POLYGALACTURONASE INHIBITOR 1 16 338 - -
Vivi6g04552 344 Gene3D Ribonuclease Inhibitor 27 338 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04552 Vivi-Chr6 147467353 147468669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04552 69 339 Receptor kinase-like Gene Family AT4G08850 28.777 3.72e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04552 - - aprc:113862147 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04552 6 147467353 147468669 Vivi6g04552 6 147467353 147468669 ECH