Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04533 ATGGCACCAAGATGGAAAGGAAAAGATGCAAAATCGAAAAAGGATGCAGAGGCTGAGGCACTTAAAGAACCCATGTCAAAGATTGTATCACAACTTCAGTCTTCCTTACTTCAATCAGATACTTGTGGATTTCTTTCTGATAACAGTGTATGCTTAGCCGTGCAAGCTGAACAACTTGACCTGCTTGATAAAGCATGCTTTGGTCGACCTGTGAGAAAAGTTGAAAAGGACATGTACTGGTTTCAATTAACCTTGGAGGAAGCATTCTACCTATGTTATTCCTTGAAATGCCTCAAGATTAATGGTGGTGCTGAATCTGGTCCTTCAAATGATGATGAGTTGTGGCATTACTTAAAGTCCAAGAAAGAAGCTTTCCCTTTTTACTACAAGGCTTATTCTCACCTTCGAATGAAAAACTGGGTTGTAAGGTCAGGGGCTCAGTATGGTGTAGACTTCATTGTTTATCGCCATCATCCGGCTCGGGTGCATTCTGAGTATGGTGTACTTGTTCTATCACGTGACAATGATGATTCTGTAAATGGAAGATTGAGAGTATGGTCTGACGTTCAATGCACTACTCGACTTCTTGGAAGTGTCGCAAAAACTTTATTAGTTTTGTATGTTAATAAAAATGGTCACTGTGACGAGTCTCCATTATGTTTGGAAAACTATGCTGTTGAAGAGCGCACAATCTCTAGATGGAGTCCAGAACAATGTCGTGAAAGATCCATATAG 735 0.4027 MAPRWKGKDAKSKKDAEAEALKEPMSKIVSQLQSSLLQSDTCGFLSDNSVCLAVQAEQLDLLDKACFGRPVRKVEKDMYWFQLTLEEAFYLCYSLKCLKINGGAESGPSNDDELWHYLKSKKEAFPFYYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSRDNDDSVNGRLRVWSDVQCTTRLLGSVAKTLLVLYVNKNGHCDESPLCLENYAVEERTISRWSPEQCRERSI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04533 244 Gene3D - 124 218 IPR011856 GO:0003676
Vivi6g04533 244 Pfam tRNA intron endonuclease, N-terminal domain 43 102 IPR006678 GO:0000213|GO:0006388
Vivi6g04533 244 FunFam tRNA-splicing endonuclease subunit Sen2-1 124 220 - -
Vivi6g04533 244 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 125 213 IPR036167 GO:0006388
Vivi6g04533 244 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 3 73 IPR006676 GO:0000213|GO:0006388
Vivi6g04533 244 CDD tRNA-intron_lyase_C 129 212 IPR006677 GO:0000213|GO:0006388
Vivi6g04533 244 Pfam tRNA intron endonuclease, catalytic C-terminal domain 126 212 IPR006677 GO:0000213|GO:0006388
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04533 Vivi-Chr6 147124534 147126169 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04533 K15322 - gmx:100807021 367.466