Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04532 AATACTCCTACTGTATGCAAAAAATTGGAAAGTGTAATCAACAAAGCTAGTCAAAATCCAGAAATGGAAAAGCCTTCACCACTATTGATCTTCCAAATCATCTTATTCCTTCTCACCCAATCACTTCTTGCCACATCACACTCTCCAAACCCCACTCCCGTTACCTTCTCCGTCACCGAATTCGGAGCAACCGGAGACGGCGTCCACTACGACACCTCATCAATCCAATCCACCATCGACTCATGTCCGTCCGGCCTCCCCTGCCGCGTCACCTTCCCAGCACCGGGGAAGTACCTAACAGCCACCATATTCCTAAGATCCGGCGTGATCCTGAACGTGGAGACAGGCGCCACCATCCTCGGCGGCACGAAACTGGAAGATTATCCGAAGGAGTCGTCGAGGTGGTACGTGGTGTTGGCGGAGAACGCGACGGATGTTGCGATCGAAGGCGGCGGCGTGGTGGATGGACAGGCGGAGAAATTTGTAGTGAGGTATAATCAGAGGAAGAATGTGATGGTGAGCTGGAATCAAACTGGAGCTTGTTTGGGTGATGAATGCAGACCTAGACTTGTTGGATTTCTTGGATGTAAGAATGTTAGAATCTTCAACATTACTCTCAATCAACCTGCTTATTGGTGCTTACATTTGGTGCGGAGTGAAAACATATCCATTCGTGATATTGCAATTTATGGAGACTTGAATATACCAAACAACGATGGAATTGATATTGAGGACTCAAACAACACGGCAATCACTCGATGCCACATTGACACAGGGGATGATGCAATCTGTCCAAAGTCATCCACTGGCCCTGTTTACAATTTAACTGTCACTAATTCTTGGATTCGATCCAAATCTTCTGCAATCAAATTAGGCAGTGCTAGTTGGTTTGAATTCAAGCATTTTGTTTTTGACAATATCACTATTGTTGATTCTCATAGAGGGCTTGCGTTCCAGATCCGCGATGGAGGAAATGTCGATGACATTGTCTTCTCAAACATAAATATAAGCACAAGATACTATGATCCATTATGGTGGGGTAGAGCTGAGCCTATCTATGTCACAACTTGCCCAAGAGACTCAACCTCAAAAGAGGCTTCAATCTCAAATGTCCGTTTCATCAACATCACAGCTAATTCTGAAAACGGAATCTTCCTCGCAGGTTCAAAGAGAGGATTGTTAAGAAACTTAAGCTTCATCAACATGAACATCACTTACAGAAGGCTCACCGGTTATTCTGGTGGGTTGTTGGACTATAGACCAGGATGCCAAGAATTGGTTAAACATAAGACTGCTGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTTGAAATGAGATGGGAAAATAATGAACTTGAGCAGTGGAACAATCCTATGGAGTTTAAACCATCTACTGTGAATAACATCTATTTCTCGAATTTTAATTCTATTTTGTATTCAAATAGCAAATCAAGTTGA 1470 0.434 NTPTVCKKLESVINKASQNPEMEKPSPLLIFQIILFLLTQSLLATSHSPNPTPVTFSVTEFGATGDGVHYDTSSIQSTIDSCPSGLPCRVTFPAPGKYLTATIFLRSGVILNVETGATILGGTKLEDYPKESSRWYVVLAENATDVAIEGGGVVDGQAEKFVVRYNQRKNVMVSWNQTGACLGDECRPRLVGFLGCKNVRIFNITLNQPAYWCLHLVRSENISIRDIAIYGDLNIPNNDGIDIEDSNNTAITRCHIDTGDDAICPKSSTGPVYNLTVTNSWIRSKSSAIKLGSASWFEFKHFVFDNITIVDSHRGLAFQIRDGGNVDDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVRFINITANSENGIFLAGSKRGLLRNLSFINMNITYRRLTGYSGGLLDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKPSTVNNIYFSNFNSILYSNSKSS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04532 489 Gene3D - 33 413 IPR012334 -
Vivi6g04532 489 Pfam Glycosyl hydrolases family 28 85 406 IPR000743 GO:0004650|GO:0005975
Vivi6g04532 489 PANTHER PECTIN LYASE-RELATED 48 456 - -
Vivi6g04532 489 SMART pbh1 326 348 IPR006626 -
Vivi6g04532 489 SMART pbh1 246 267 IPR006626 -
Vivi6g04532 489 SMART pbh1 363 388 IPR006626 -
Vivi6g04532 489 SMART pbh1 219 245 IPR006626 -
Vivi6g04532 489 SMART pbh1 272 293 IPR006626 -
Vivi6g04532 489 SUPERFAMILY Pectin lyase-like 41 415 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04532 40 484 Glycoside Hydrolase AT3G57790 66.157 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04532 - - gmx:100794954 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04532 6 147115616 147118761 Vivi6g04532 6 147115616 147118761 ECH