Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04506 ATGACCATGTCGTCACTGCGTTTGGATTCTCACGCAATATGCACTCCTCAGCCTCAACGTCCCTTCACCTTCAAGCACTTTCCTTCCACTCGAAACGTTGTCGTTTGTTCCGCAAAGCCAATTGCGCCGCCTCCTACTAAACTCACCGCCGCCGGTTCTACCGCCGGCCGAATCGAGTCGCTCAGTCAGGTCTCCGGTGTTCTGGGTTGTCAGTGGGGCGATGAGGGGAAGGGAAAGCTGGTGGATATCTTAGCTCAGCACTTTGAAATCGTTGCACGTTGTCAGGGTGGAGCTAATGCCGGCCATACCATTTATAATGCGGAGGGGAAAAAGTTTGCCCTTCATCTTGTTCCTTCTGGTATCCTTAATGAGGAAACACTGTGTGTTATTGGTAATGGTGTTGTAGTACACCTGCCAGGGTTGTTTGAAGAAATCGACAACCTTGAGTTAAATGGGGTCTCATGTAAGGGAAGGATATTGATTTCGGATCGGGCCCACCTGTTGTTCGATTTCCATCAAACTGTGGATGGGTTGAGGGAAGCTGAGCTATCTAAGTCTTTCATTGGCACCACCAAGAGAGGCATTGGACCGTGCTACGCCAGCAAAGCTAACCGCAATGGGATTAGAGTTGGTGATTTGCGGTACTTGGAAACTTTACCTCAGAAGCTTGATCTTTTGTTATCAGATGCAGCATCGAGGTTCAAAGATTTTAAGTATGGTCCGGACGTGCTCAGGCAAGAAGTGGAGAAGTACAAGAGGTATGCTGAAAGGTTGGAGCCATATATTGCCGATACTGTGCATGTTATGAATGAAGCTATAACACAGAAGAAGAAGATCTTGGTTGAAGGAGGACAAGCAACCATGTTGGACATTGATTTCGGTACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGTGGTATATGCACTGGTCTTGGTATTGCTCCAAGAATAATTGGTGATTTAGTAGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTCCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACCGGCCGTCCTCGACGATGTGGTTGGTTGGATATAGTTGCCTTAAAATTCTCATGTCAGATCAACGGTTTTTCATCATTGAATCTGACCAAGCTGGATGTTTTGTCTGATCTCGATGAAATACAATTGGGTGTTTCCTATAAACATGCTGATGGCACCCAGGTCAAATCATTCCCGTCAGATCTTCGTCTTCTCGAGCAATTGAAGGTGGAATATGAAACACTTCCTGGATGGAAGACCGACATTTCATCGATTAGAAACTATTCTGACCTTCCAAGAGCTGCACAGTTGTACGTGGAAAGGATAGAAGAACTCGTTGGTGTCCCTATTCACTACATCGGTGTTGGGCCTGGACGTGATGCTCTCATATACAAATGA 1461 0.4634 MTMSSLRLDSHAICTPQPQRPFTFKHFPSTRNVVVCSAKPIAPPPTKLTAAGSTAGRIESLSQVSGVLGCQWGDEGKGKLVDILAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEETLCVIGNGVVVHLPGLFEEIDNLELNGVSCKGRILISDRAHLLFDFHQTVDGLREAELSKSFIGTTKRGIGPCYASKANRNGIRVGDLRYLETLPQKLDLLLSDAASRFKDFKYGPDVLRQEVEKYKRYAERLEPYIADTVHVMNEAITQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRIIGDLVGVVKAYTTRVGSGPFPTEILGPGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFSSLNLTKLDVLSDLDEIQLGVSYKHADGTQVKSFPSDLRLLEQLKVEYETLPGWKTDISSIRNYSDLPRAAQLYVERIEELVGVPIHYIGVGPGRDALIYK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04506 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 485 IPR027417 -
Vivi6g04506 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 163 261 IPR042110 -
Vivi6g04506 486 FunFam Adenylosuccinate synthetase 327 486 - -
Vivi6g04506 486 ProSitePatterns Adenylosuccinate synthetase active site. 194 205 IPR033128 -
Vivi6g04506 486 PANTHER ADENYLOSUCCINATE SYNTHETASE 53 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 67 326 IPR042109 -
Vivi6g04506 486 NCBIfam adenylosuccinate synthase 67 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 FunFam Adenylosuccinate synthetase, chloroplastic 163 261 - -
Vivi6g04506 486 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 71 78 IPR018220 GO:0005525
Vivi6g04506 486 SMART adenylsucc_synt 64 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 Hamap Adenylosuccinate synthetase [purA]. 1 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 Pfam Adenylosuccinate synthetase 67 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 CDD AdSS 63 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vivi6g04506 486 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 327 486 IPR042111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04506 Vivi-Chr6 146631045 146635544 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04506 K01939 - gmx:100792329 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04506 6 146631045 146635544 Vivi6g04506 6 146631045 146635544 ECH