Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04381 ATGCTCCACAGTGCCACTCCCATTTCAATTGCCAGCACAGCACCTCACCGCATCCAACTCAGTGGCGCCACCGAGTCAACTCGCCCTCCAAAATCCACTATCACACCCAAGAAGAAACCCAACGAGTTACCATTCAAGGAGAAAAAAGATGGTTTCGTTGACTACAACAGAGGGCAGCACGAGGTATCCACCAAAATCGACGGCCTCCGCAAGGACGACATCCCCGCACACTACCGCCTCCGAGTCGCCGGAAACCGCTTCCAAAAGGATTGGACTGTGTCGGAGGTTGCCGACTCAGTCCTCTCCCTCACCCTCCGCGACGACGTTGAAGGCCTACTCAACCGCTGGATAGGCCGCTTTGCTCGCAAGAATTTCCCTTTCCTCATTAGGGAGTTGACACATAGAGGTTCAATTGAACACTGTAACTTAGTTTTCAGCTGGATGAAGAACCAGAAGAATTATTGTGCCAGAACAGATATATACAACATGATGATAAGGTTGCAGGCTAGGCATAATAGAATGGACCAGGCACGTGGGTTGTTTTTTGAGATGCAAAAATGCAGGTGTAAACCTGATGCTGAGACTTACAATGCTCTTATTAACGCGCATGGTCGAGCTGGACAATGGCGTTGGGCTATGAATATCATGGACGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACGTACAACAACTTGATTAATGCTTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATCTTTGCAAGAAAATGACTGACAATGGAGTTGGACCAGATCTCGTCACTCACAATATTATGTTGTCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCGTATTTTGAACTAATGAAGGGAACTCACATTCGCCCTGATACAACCACGCACAATATTGTTATCCATTGTCTAGTGAAACTTCAACAATATGACAAAGCCATTGATATTTTTAATTCCATGAAGGAAAAGAAGTCAGAGTGTCGCCCTGACGTTGTAACATACACTAGTATTATTCATTTGTATTCTATGTGTGGGAAAATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCAGAAGGGATGAAACCAAATATAGTCTCATACAATGCACTACTAGGTGCATATGCTGCTCGTGGGATGGAAAATGAGGCCCATCTGGTTTTTAATAAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTTAATGCTTATGGAAGATCACGAAAGCCCCAAAAAGCAAGGGAAATATTCAAAATGATAAAGAAAAACAACTTGAAGCCAAACATTGTCAGTTACAATGCACTGATTGATGCCTATGGGTCAAATGGTTTGCTTGAAGATGCAATAGAAATCTTGCGGGAAATGGAACAAGATAAGATTCATCCAAATGTGGTCTCAATATGCACGCTCTTGGCTGCCTGTGGGCGCTGCTGTCAGAAGGTGAAGATTGATACTGTGCTATCAGCCGCTCAGATGCGAGGCATTAAATTGAACACAGTTGCATATAATTCAGCTATAGGAAGCTATATTAGTATGGGGGAATATGACAAAGCTATAGACTTGTATAAATCTATGAGTAAGAAAAAAATTAAATCTGATTCTGTTACTTACACTATCTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGGGAGGCCTTATCTTTTATGGAAGAAATGATGCATCTCAAACTTCCTATGTCCCAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACGAGGGCAAATCGTAGAAGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGTAATCCAGATGTGGTTACATATACTGCAATGCTTGATGCCTACAATACAGCTGAGAAGTGGGAGAAAGCATATGCACTCTTTGAAGAAATGGAAGCAAATGGCACCAAGCTGGATACGATCGCATGTGCAGCTGTAATGAATGCTTTTAACAAAGGTGGTTGGCCAAGAAGGGTCCTTAGTCTTGCACAACGTATGAGAGAAAAAGAGATTCCTTTAAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACGTGATTGGAAGACAGCTGTTGATGTGATCAAGTACATGGAGCCTTCACTTCCCATAATTTCATCTGGGTGTTTGAATCTTTTCCTGAATTCCTTAGGAAAAAGTGGAAAGATAGAAACTATGTTTAAGCTATTCTTCAAAATGTTGACATCGGGTGCTGATGTTAACTTCAATACTTATTCTATTTTATTGAAAAACCTCTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTACTACAATGGATGGAGGATGCAGGAATTCGTCCTTCAAATGAAATGTACCATGATATTTCCTCCTTTTCACAAAAATGCTGTGGGGCTGAAAATGCTGCTGTCATAAAAGAAAGGCTTGAATCCTTGCAAAGAAAACATGCAGATCAAATTTCTGCAAGCAAACCTTGTGAATCTCATCTTAGTTGA 2517 0.412 MLHSATPISIASTAPHRIQLSGATESTRPPKSTITPKKKPNELPFKEKKDGFVDYNRGQHEVSTKIDGLRKDDIPAHYRLRVAGNRFQKDWTVSEVADSVLSLTLRDDVEGLLNRWIGRFARKNFPFLIRELTHRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLQARHNRMDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNLCKKMTDNGVGPDLVTHNIMLSAFKSGAQYSKALSYFELMKGTHIRPDTTTHNIVIHCLVKLQQYDKAIDIFNSMKEKKSECRPDVVTYTSIIHLYSMCGKIENCEAAFNMMLAEGMKPNIVSYNALLGAYAARGMENEAHLVFNKIKQNGFRPDIVSYTSLLNAYGRSRKPQKAREIFKMIKKNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCCQKVKIDTVLSAAQMRGIKLNTVAYNSAIGSYISMGEYDKAIDLYKSMSKKKIKSDSVTYTILISGCCKMSKYGEALSFMEEMMHLKLPMSQEVYSSVICAYSKRGQIVEAESTFNLMKSSGCNPDVVTYTAMLDAYNTAEKWEKAYALFEEMEANGTKLDTIACAAVMNAFNKGGWPRRVLSLAQRMREKEIPLSDTIFFEMVSACSLLRDWKTAVDVIKYMEPSLPIISSGCLNLFLNSLGKSGKIETMFKLFFKMLTSGADVNFNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIRPSNEMYHDISSFSQKCCGAENAAVIKERLESLQRKHADQISASKPCESHLS 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vivi6g04381 838 MobiDBLite consensus disorder prediction 13 34 - -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Vivi6g04381 838 Pfam PPR repeat 300 327 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 336 370 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 300 329 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 406 440 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 264 298 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 195 227 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 371 405 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 160 193 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 230 262 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 511 544 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 616 649 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 441 475 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 546 576 IPR002885 -
Vivi6g04381 838 NCBIfam pentatricopeptide repeat 582 615 IPR002885 -
Vivi6g04381 838 FunFam Os07g0213300 protein 274 388 - -
Vivi6g04381 838 FunFam Predicted protein 402 517 - -
Vivi6g04381 838 Pfam Pentatricopeptide repeat domain 742 790 IPR002885 -
Vivi6g04381 838 Pfam Pentatricopeptide repeat domain 392 453 IPR002885 -
Vivi6g04381 838 Pfam Pentatricopeptide repeat domain 330 381 IPR002885 -
Vivi6g04381 838 Pfam Pentatricopeptide repeat domain 455 486 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Vivi6g04381 838 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 628 798 - -
Vivi6g04381 838 FunFam Pentatricopeptide repeat-containing protein At2g41720 95 255 - -
Vivi6g04381 838 SUPERFAMILY TPR-like 298 640 IPR011990 GO:0005515
Vivi6g04381 838 SUPERFAMILY TPR-like 189 363 IPR011990 GO:0005515
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 664 836 IPR011990 GO:0005515
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 397 468 IPR011990 GO:0005515
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 469 575 IPR011990 GO:0005515
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 327 396 IPR011990 GO:0005515
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 576 644 IPR011990 GO:0005515
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 252 326 IPR011990 GO:0005515
Vivi6g04381 838 MobiDBLite consensus disorder prediction 13 45 - -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Vivi6g04381 838 Gene3D Tetratricopeptide repeat domain 103 239 IPR011990 GO:0005515
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
Vivi6g04381 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Vivi6g04381 838 FunFam Pentatricopeptide repeat-containing protein At2g41720 662 838 - -
Vivi6g04381 838 Pfam PPR repeat family 230 273 IPR002885 -
Vivi6g04381 838 Pfam PPR repeat family 582 625 IPR002885 -
Vivi6g04381 838 Pfam PPR repeat family 160 202 IPR002885 -
Vivi6g04381 838 Pfam PPR repeat family 509 557 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04381 441 818 Glycosyltransferase AT1G05670 22.427 9.36e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04381 - - gmx:100814643 1415.98