Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04323 ATGCCAATTTCGTCTCGCCTCCATCTCTTTGCAAGACCGTTACTCTCTTCCTCTCTCCTTTACCCTTCGCACCAGAACGGAATTAGAAAAACATTGATGAGGATTGGCATGATGACCTACTCGTTTTCTTCTACAGTTTCAGCTGAAGCTTCGGGTTTAGAATGTGATGCGATCTATGATGATGTCAAAGCAGCGGAGAAAAATAACGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGTGAGTTTAGCAAGGAGTCGATGTTATCTTTGCGGAAGTTTTTTGGTGTACGCTATGCCAATGTGGTATCTACTGGCTCTTTGAAGCTTGACTTAGCTCTTGGAGTTGGAGGATTACCGAAGGGTAGGATTGTTGAAATTTATGGACGAGAAGCTGCTGGTAAGACAACTCTTGCCCTTCAGATTATTAAAGAAACTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAGTGCATTAGACCTTTCACTTGTGGAGTCAATGGGTGTAAATACCAAAAACCTTCTCATCTCAAATCCAGACTGTGCAGAAAATTTGTTGAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGACGTGATTGTGGTTGATAGTGTTGCTGCTCTTGTCCCCAAATGCGAACTTGATCAATTGGGAGTTGCTACGAGTCATGATTTACATTCACGAATGATGACTCAAGCTCTACGGAAAATTAATTATTCATTATCTCGCTCACAAACTCTCTTAGTTTTTGTTAATCAGGTTAGATTTAGTCCAAGATTATTTGGGGGACATGGACCTATGGAAGAGGTCACTTGTGGTGGAAATGCTTTGAGATTCTATGCAGCGGTTCGATTGCGACTTTCAAGAATGGGATTGATCAAAACTGAAGATAAGGTTGAGGGTATTACGGTATGTTGCCAAGTAGTAAAAAATAAACTAGCACCCGCAGCAATGAAGAAAGCCGAACTAGGTATCAAGTTTGGAAGAGGCTTTTGCCACGAATCAGAGGTCTTTGATTTGGCTTGTGAACACGGACTCATTATGAAAGACGAGGGGAACTATTTTATTGAAGGGGTGGCTCTTAGTAGTAGAGAAGCTGCCGAACATTTTTTGGTTAAAAATAAGAAGATTTGTGACAAGTTAGTTATGGACATGAAAAGACTTTATCTTTAA 1182 0.4069 MPISSRLHLFARPLLSSSLLYPSHQNGIRKTLMRIGMMTYSFSSTVSAEASGLECDAIYDDVKAAEKNNALCLAVSQLASEFSKESMLSLRKFFGVRYANVVSTGSLKLDLALGVGGLPKGRIVEIYGREAAGKTTLALQIIKETQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVATSHDLHSRMMTQALRKINYSLSRSQTLLVFVNQVRFSPRLFGGHGPMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCCQVVKNKLAPAAMKKAELGIKFGRGFCHESEVFDLACEHGLIMKDEGNYFIEGVALSSREAAEHFLVKNKKICDKLVMDMKRLYL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04323 393 ProSitePatterns recA signature. 279 287 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vivi6g04323 393 ProSiteProfiles RecA family profile 2. 263 339 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vivi6g04323 393 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 PRINTS RecA protein signature 310 339 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 PRINTS RecA protein signature 363 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 PRINTS RecA protein signature 276 304 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 CDD RecA 101 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 Gene3D - 97 391 IPR027417 -
Vivi6g04323 393 ProSiteProfiles RecA family profile 1. 98 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vivi6g04323 393 PANTHER RECA 54 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 322 IPR027417 -
Vivi6g04323 393 Pfam recA bacterial DNA recombination protein 70 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vivi6g04323 393 SMART AAA_5 120 294 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04323 Vivi-Chr6 143507275 143510110 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04323 - - gmx:100777423 571.237