Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04265 ATGCCTCGCTATGATGATAAGTACGGCAATACTCGCCTCTATGTGGGTCGTCTGTCTTCCCGAACTCGCTCTCGTGATCTTGAGAGAGTCTTCAGCCGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCAAGGTACAACTTGGATGGGCGTGATGTTGATGGAAGTCGTCTTATTGTGGAATTTGCTAAAGGGGTTCCTCGGGGTTCTCGTGATTCTCGGGATTCTCGAGAATATCTTGGTAGAGGTCCTCCTCCTGGCTCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATCGCTGTGGGGAGAGAGGTCACATAGAGAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGTAGACATGCACGGAGTGTTTCACGCTCTCCAGGAAGGTCACGCTCTCCTAGGCGTGGCAGAAGCCGGGATAGAAGCTACAGCCCAGCCCGCAGCTATAGCCGATCAAGATCTCCTGTCAGATCTCGATCGCCTGTCAGATCAAGATCTCCTGTCAGAAGAGATCGAAGCCCAGTTCCGGATGACAGATCTAGGAGCCCCCCACCTTCCAAGTCAAGGAAGTATAGTAGATCTCCTGAAGGTAGTCCTCAAAGGAGTGCATCTCCTAGTAATGATAAGGTGGTCACTGCCCAAGATGGGTCTGATTATAGTGATGGTCCTAGAGTGAAAAGCAGAAGCCCTTCAAGGGACAATGATGACAGCCCTAAGGCTAATGGAAGAAGTCGCAGCAGAAGCCGCAGCAGGAGTCCTAGCCGCAGTCCCAGGGATGAGGATAGGAGCCCCGTGGAGGATGATGATGACACCACTCGTCGCTCTCCATCACCTTAA 936 0.5085 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPGRSRSPRRGRSRDRSYSPARSYSRSRSPVRSRSPVRSRSPVRRDRSPVPDDRSRSPPPSKSRKYSRSPEGSPQRSASPSNDKVVTAQDGSDYSDGPRVKSRSPSRDNDDSPKANGRSRSRSRSRSPSRSPRDEDRSPVEDDDDTTRRSPSP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04265 311 MobiDBLite consensus disorder prediction 147 169 - -
Vivi6g04265 311 SUPERFAMILY RNA-binding domain, RBD 7 106 IPR035979 GO:0003676
Vivi6g04265 311 SUPERFAMILY Retrovirus zinc finger-like domains 97 145 IPR036875 GO:0003676|GO:0008270
Vivi6g04265 311 ProSiteProfiles Zinc finger CCHC-type profile. 128 144 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 MobiDBLite consensus disorder prediction 140 311 - -
Vivi6g04265 311 MobiDBLite consensus disorder prediction 285 311 - -
Vivi6g04265 311 MobiDBLite consensus disorder prediction 197 218 - -
Vivi6g04265 311 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 97 125 - -
Vivi6g04265 311 MobiDBLite consensus disorder prediction 254 276 - -
Vivi6g04265 311 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
Vivi6g04265 311 MobiDBLite consensus disorder prediction 180 194 - -
Vivi6g04265 311 Gene3D - 3 84 IPR012677 -
Vivi6g04265 311 Pfam Zinc knuckle 127 144 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Vivi6g04265 311 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 220 - -
Vivi6g04265 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Vivi6g04265 311 Gene3D - 85 126 - -
Vivi6g04265 311 MobiDBLite consensus disorder prediction 220 247 - -
Vivi6g04265 311 Gene3D - 127 171 - -
Vivi6g04265 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Vivi6g04265 311 SMART rrm1_1 12 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04265 Vivi-Chr6 142388871 142392237 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04265 K12896 - gmx:100813237 366.696