Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04245 ATGAGAGATTTTGTAATCCTCGGTTCTTCCATCATCACTCCTCCTCCCAACTCCCACCTACCACCCTCCTCCTCTTCCTCTTCCTCCACTCCACAGCACCGCCACCCAATCCTCAAACCCCACAAACCTTCCTCTCTCCCAAAGCTCAAACCTTTATCTTCTAGTAACACTTCTTCCACCCCTCTTCAAACCCCTCTCAAACTCAAAGATTCTGATACCCTTGAAACTGATTCCGAGCTCAATCCTGAGACATTGGCCAATGCTGTTCTTGTAGGTATCAAAGACAATAATGTCCGGAGTGTGATTGAGAGATTGAACAGAGCGGAGGGTCTTGGAGGGGTTTCTTTATCTGCTCATCTTGATGCTTCTGTCATTGCAAATGAGTGTTGTCACTTGGTTACACGTGGCCACATTGAAGAAGCTGTTGAATTGATGGAGATTCTCCAACGTTTCCAGTTATCAATTGCAGAACTTGTTGAGCCGTCTCACATTCTAAAAAGATGTGTTCTTAATCGGAAACCAGTTTTAGCTGTGAGGTATGCGTCCCTTCTTCCACAAGCACATATATTATTTAACCGCATCATATTAGAATTTGGCAAAAGTATGGATTTGGTTTCTGCTCTGAAAGCTTACGACGCAACGAGGAAGAACTTTCAAAAGCCCAATCTGTATATATGCCGCGCAATAATTGATGCATGTGGTCTCTGTGGGGATTTCATGAAATCTAGGTACTTATATGAGGATTGGCTTAATCAGAAAATCACTCCAAATATATATGTCTTCAACAGTCTCATGAATGTGAATGCCCATGATTTCAGCTACTCGTTAGATCTATATCAGAATATGCAGAAGCTAGGCGTGAAACCCGATGTGACCTCATATAACATCCTACTAAAAGCATGCTGTGTTGCTGGAAGAGTTGACCTTGCCCAAGACATGTATAAAGAACTTAAGCATTTGGAATCTGTGGGACAACTGAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAGTTGTGGCAAATGGCTCTAAAAATTAAGCGTGACATGCTTTCTGCTGGTGTTTCTCTTAATGTTGTTGCGTGGTCATCATTAATCAATGCATGTGCACATGCAGGACTTGTGGAGCAGGCAATTCAGTTATTTGAAGAAATGATGTCGTCTGGCTGTGAACCCAATACACGGTGTTTCAACATCATTTTAAATGCATGTGTTGAAGATTGTCAGTATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAATAAGATGTTAGTGCCCTTTGATGAAAGCAACAATAACAATTCAGAGCAGGGAGGCATGCATAATGTTACCAAAGTACCAATAGGCATTTCTAGTTCACATATCTTGAGTTGTACTGAGAGGTTCCCTTTCGCACCAACTACATCTACATACAATATTTTACTGAAGGCTTGTGGTACTAATTACTATCATGCGAAAGCACTGTTCAACGAGATGAGAACAGTAGGTCTTTCCCCTAATCAAATAAGCTGGTCAACTTTGATAGATATATGTGGAGCATCAGAAAACGTGGATGGTGTTGTTGAGATTTTGAGGACCATGATTGATTCTGGAATTAAACCCGATGTTGTTGCATATACAACCGCCATTAAGGTTTGTGTTGAAAGTAGGAATTTTACGAAAGCACTAACACTATATAAAGAAATGAAAAGCTACGGGACACTTCCAAATATGGTGACATATAATACACTTCTAAGGGCACGGAGCAAATATGGATCTTTGCGTGAAGTGCAACAGTGCCTGGCTATATATCAGGATATGCGGAAGGCGGGGTACAAACCCAATGACTACTATCTGAAGGAGCTGATTGGGGAGTGGTGTGAAGGAGTAATACAAGAAAGCGGAGAGTACGAATGTGAATTTTCTTACAGCAAGAAACCTGAAAAAGAGAGACCTCGGAGTTTACTTCTTGAAACCATTGCGACACATCTACTAAAGAGAGTAGCTGACATCTTAGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGCCTGGTCATTCTCGCAGTTCTTAGAATGATCAAAGAGAACTATGCTTTTGGGCATTCAGTGAATGATGACATCTTGATCATCATAGGTGCTATCAAAGCAGATGAGAGTCCATCCAAAGAGATATTAGAAGTGCAAGAGGCTATTATCAAACTTCTTTGGAATGAATTGGGGCTTGAGGCTCTTCCACCAAATTGCAGGACAGAGTTCCAGAACCCCAAACTTTCAAATCTCACCCTAAAAGCACTGCCAGCAGATGAATCATTACCCACAACAACGGGGCTTCACACAAGGAGACCAGCAGCTCTACAAAGACTGAAGGTCACCAAAAAATCATTACACCATTGGTTACAGAGGAAAGTAAGTGTAAAATAG 2430 0.414 MRDFVILGSSIITPPPNSHLPPSSSSSSSTPQHRHPILKPHKPSSLPKLKPLSSSNTSSTPLQTPLKLKDSDTLETDSELNPETLANAVLVGIKDNNVRSVIERLNRAEGLGGVSLSAHLDASVIANECCHLVTRGHIEEAVELMEILQRFQLSIAELVEPSHILKRCVLNRKPVLAVRYASLLPQAHILFNRIILEFGKSMDLVSALKAYDATRKNFQKPNLYICRAIIDACGLCGDFMKSRYLYEDWLNQKITPNIYVFNSLMNVNAHDFSYSLDLYQNMQKLGVKPDVTSYNILLKACCVAGRVDLAQDMYKELKHLESVGQLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNVVAWSSLINACAHAGLVEQAIQLFEEMMSSGCEPNTRCFNIILNACVEDCQYDRAFRFFHSWKGNKMLVPFDESNNNNSEQGGMHNVTKVPIGISSSHILSCTERFPFAPTTSTYNILLKACGTNYYHAKALFNEMRTVGLSPNQISWSTLIDICGASENVDGVVEILRTMIDSGIKPDVVAYTTAIKVCVESRNFTKALTLYKEMKSYGTLPNMVTYNTLLRARSKYGSLREVQQCLAIYQDMRKAGYKPNDYYLKELIGEWCEGVIQESGEYECEFSYSKKPEKERPRSLLLETIATHLLKRVADILAIDVQGLTKVEARLVILAVLRMIKENYAFGHSVNDDILIIIGAIKADESPSKEILEVQEAIIKLLWNELGLEALPPNCRTEFQNPKLSNLTLKALPADESLPTTTGLHTRRPAALQRLKVTKKSLHHWLQRKVSVK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04245 809 Gene3D Tetratricopeptide repeat domain 321 456 IPR011990 GO:0005515
Vivi6g04245 809 Gene3D Tetratricopeptide repeat domain 461 657 IPR011990 GO:0005515
Vivi6g04245 809 Gene3D Tetratricopeptide repeat domain 186 320 IPR011990 GO:0005515
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 366 400 IPR002885 -
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 331 365 IPR002885 -
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 293 318 IPR002885 -
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 545 578 IPR002885 -
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 510 544 IPR002885 -
Vivi6g04245 809 NCBIfam pentatricopeptide repeat 580 616 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vivi6g04245 809 Pfam Pentatricopeptide repeat domain 478 520 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 615 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Vivi6g04245 809 MobiDBLite consensus disorder prediction 7 80 - -
Vivi6g04245 809 Pfam PPR repeat family 364 411 IPR002885 -
Vivi6g04245 809 Pfam PPR repeat family 256 302 IPR002885 -
Vivi6g04245 809 Pfam PPR repeat family 542 588 IPR002885 -
Vivi6g04245 809 PANTHER OS03G0856100 PROTEIN 16 429 - -
Vivi6g04245 809 MobiDBLite consensus disorder prediction 48 69 - -
Vivi6g04245 809 Pfam PPR repeat 331 361 IPR002885 -
Vivi6g04245 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04245 237 637 Glycosyltransferase AT1G05670 23.923 2.52e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04245 - - gmx:100794606 1095.11