Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04192 ATGATGAATTCATCGAACGGTAATATGAACCCGTCTTCTTCTTCATCGGGTCCTACACAGTCTCAAGGTCTCAAAACCTATTTCAAAACCCCTGAAGGAAGATATAAACTTCAATTCGAGAAATCTCACCCTGCTGGTCTTCTTCAATTCAATCATGGCAAAACCGTTTCTCTGGTAACATTGGCCCATCTTAAGGAGAAGCCGGCGCCTTCAACTCCGACCGCCTCGTCTTCGAGTTTCAGTGCCAGCAGTGGGGTACGGTCAGCCGCGGCTAGACTGTTAGGAGGAAGTAATGGAAGCCGGGCGCTAAGTTTTGTTGGTGGAAATGGTAGTAGCAAAAGCAATGGAGTGGCTGGTAGGATTGGTTCGATTGGGACCTCGAGTTCAAGTAGCTCTGTGGCTAATCCAAATTTTGATGGGAAAGGGTCATACTTGGTCTTCAATGCCGGGGATGCAATTTTGATAAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATCCACTTCAGTAATTCAAATCCCGTGTGCCACGCATTTGATCAGGATGCTAAGGACGGGCATGATTTGCTCATAGGCCTGTTCTCCGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGATTGTTGGGGCCCACCATTACAACAAAGACGGCATTCTCAATAACAGTCGTTGTACATGTATTTCTTGGGTGCCCGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCTGATGGGAACTTGTACGTATATGAAAAGAATAAAGATGGTGCCGGCGATACTTCATTCCCAATTCTCAAAGATCCAACTCAGTTTTCTGTTTCTCATGCACGGTACAGTAAGAGTAATCCAGTTGCGAGATGGCATATATGCCAGGGTTCAATTAACAGCATTTCTTTCTCAGCGGATGGGGCATACTTGGCAACTGTTGGACGAGATGGTTACTTGCGTGTGTTTGATTATGCAAAAGAACACCTTGTATGCGGCGGAAAAAGTTATTATGGTGGTTTATTATGTTGTGCTTGGAGCCTGGATGGAAAGTATATTTTGACGGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTTGCATGGGGTGAGGGACATAGCTCATGGGTCAGTGGAGTGGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAACGGAGAAACAATTATGTATCGATTTGGTTCAGTTGGTCAGGATACACAACTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCGTTGAGGCGTCCCCCTGGTGGATCCCCAACTTTTGGATCCCCGACTTTTAGTGCTGGAAGTCAGTCATCCCATTGGGACAATGCAGTCCCATTGGGCACCTTGCAACCTGCTCCAAGTATGCGAGATGTTCCAAAAATCTCTCCGCTAGTTACTCACCGGGTGCATACCGAGCCACTTTCTAGCTTGGTATTTACCCAGGAATCTGTTCTTACAGCCTGTCGGGAGGGACACATCAAAATCTGGACGAGACCTGGCATAGCCGAGAGCCAGCCAAGCAACACCGAAACTTTGTTAGCTACCAGTCTCAAGGAGAAGCCTTCACTTTCTAGCAAGATCAGCAGTTCTAGCTACAAACAATAA 1659 0.4599 MMNSSNGNMNPSSSSSGPTQSQGLKTYFKTPEGRYKLQFEKSHPAGLLQFNHGKTVSLVTLAHLKEKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKSNGVAGRIGSIGTSSSSSSVANPNFDGKGSYLVFNAGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGDTSFPILKDPTQFSVSHARYSKSNPVARWHICQGSINSISFSADGAYLATVGRDGYLRVFDYAKEHLVCGGKSYYGGLLCCAWSLDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDSYWTSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTFGSPTFSAGSQSSHWDNAVPLGTLQPAPSMRDVPKISPLVTHRVHTEPLSSLVFTQESVLTACREGHIKIWTRPGIAESQPSNTETLLATSLKEKPSLSSKISSSSYKQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04192 552 PANTHER WD REPEAT PROTEIN 10 528 - -
Vivi6g04192 552 Gene3D - 13 522 IPR015943 GO:0005515
Vivi6g04192 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Vivi6g04192 552 Pfam WD domain, G-beta repeat 344 369 IPR001680 GO:0005515
Vivi6g04192 552 Pfam WD domain, G-beta repeat 299 327 IPR001680 GO:0005515
Vivi6g04192 552 SUPERFAMILY WD40 repeat-like 132 516 IPR036322 GO:0005515
Vivi6g04192 552 MobiDBLite consensus disorder prediction 533 552 - -
Vivi6g04192 552 MobiDBLite consensus disorder prediction 1 25 - -
Vivi6g04192 552 SMART WD40_4 478 515 IPR001680 GO:0005515
Vivi6g04192 552 SMART WD40_4 221 259 IPR001680 GO:0005515
Vivi6g04192 552 SMART WD40_4 372 424 IPR001680 GO:0005515
Vivi6g04192 552 SMART WD40_4 330 369 IPR001680 GO:0005515
Vivi6g04192 552 SMART WD40_4 288 327 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04192 304 431 Miscellaneous Gene Families AT5G08390 22.656 1.81e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04192 K24741 - gmx:100782580 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04192 6 141384806 141391128 Vivi6g04192 6 141384806 141391128 ECH