Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04149 ATGCCTGCAATTCCATTTTCAAGCTCCTTCTTCGTTTTACAACCTCGCTTCAATTACCACATTACCCCTATCTTCCGTTCCCTTTCATTCCAACTCTCTTCATCTCCGTTCCCTTTCAATGCCAACTCCTCCAGCGTCAGACTCCACTGTGCTCTCTCCCAAGCCGCCGAGACAGAATCTCCGAGCGGCGGTCGGTCAGGTGCTTTATCTCCCCGTCCTCCGGTCACCGGAGAAGTTAAGAAAATCGACGTGAATCCTCCCAAGGGTACGCGTGATTTCCCGCCTGAAGACATGCGGTTGCGCAACTGGCTATTTAATAATTTCAAAGAGGTTTCAAGGCTGTATGGATTTGAGGAGATTGATTTTCCGGTTCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCTGGGGAGGAGATTAAGGACCAGCTTTACTGTTTTGAAGACCGGGGTAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGGAAGTCCGTATCACTACCATTGAAGTGGTTCACCGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGTCGCCGTGAGCACTACCAGTGGAATATGGATATCATTGGTGTTCCTGGGGTAATGGCTGAAGCAGAGCTTATATCTTCCATTGTTACTTTCTTCAAAAGAATAGGAATTACAGAATCAGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTTCTACAAGAAGTATTGAAGTCATATTCAATACCTGAAAATATGTTTGGCAAAGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTTGATGAGATAAAGAAAGAGTTGAATGCTGTTGGTCTATCACAGGAGGCTGTCCAGGATCTATTGCAAGTTCTTTCTGTAAAGTCATTGGCCGAGTTAGAAGAGAGGCTAGGAGGCAGCGGAGAAGCAATCGCTGATCTCAAACAGCTATTCTCACTAGCTGAAAAGTTTGGTTACTCCAAATGGCTTCAATTTGATGCATCAGTTGTTCGTGGCCTTGCTTATTACACTGGTGTTGTATTCGAGGGTTTTGACAGAGAAGGAAAGCTCCGAGCTATATGTGGTGGTGGCCGATATGATCATTTGTTCTCAACTTTTGGTGCTGAAGACATTCCTGCTTGTGGTTTTGGATTTGGTGATGCAGTCATAGTCGAATTGCTCAGAGAAAAGGGTCTTCTACCAGAGCTCGGCTTGCAAATAGATAACCTTGTTTGTGCCATGGATGTAGAACTTCAAGGGCATGCTGCCACAGCTGCTAACATTCTAAGAGAAAAAGGACAAAGTGTTGACTTGGTTTTGGAAAGCAAACCACTTAAATGGGTGTTTAAACGTGCAGCCAGAACAAATGCCGAGCGTCTAATATTAGTAGGAAAGTCTGAGTGGCAAAGGGGTATGGTTGGTGTCAAAATTCTCTCCACTGGTGAACAGTACGAGGTTAAATTGGATGATCTAAATTAA 1506 0.4456 MPAIPFSSSFFVLQPRFNYHITPIFRSLSFQLSSSPFPFNANSSSVRLHCALSQAAETESPSGGRSGALSPRPPVTGEVKKIDVNPPKGTRDFPPEDMRLRNWLFNNFKEVSRLYGFEEIDFPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTFFKRIGITESDVGFKVSSRKVLQEVLKSYSIPENMFGKVCVIIDKIEKIPVDEIKKELNAVGLSQEAVQDLLQVLSVKSLAELEERLGGSGEAIADLKQLFSLAEKFGYSKWLQFDASVVRGLAYYTGVVFEGFDREGKLRAICGGGRYDHLFSTFGAEDIPACGFGFGDAVIVELLREKGLLPELGLQIDNLVCAMDVELQGHAATAANILREKGQSVDLVLESKPLKWVFKRAARTNAERLILVGKSEWQRGMVGVKILSTGEQYEVKLDDLN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04149 501 Gene3D Bira Bifunctional Protein; Domain 2 80 407 IPR045864 -
Vivi6g04149 501 NCBIfam histidine--tRNA ligase 86 496 IPR015807 GO:0004821|GO:0005524|GO:0006427
Vivi6g04149 501 SUPERFAMILY Class II aaRS ABD-related 416 500 - -
Vivi6g04149 501 Hamap Histidine--tRNA ligase [hisS]. 82 501 IPR015807 GO:0004821|GO:0005524|GO:0006427
Vivi6g04149 501 MobiDBLite consensus disorder prediction 57 93 - -
Vivi6g04149 501 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 80 407 - -
Vivi6g04149 501 Pfam Anticodon binding domain 425 500 IPR004154 -
Vivi6g04149 501 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 409 501 - -
Vivi6g04149 501 PANTHER HISTIDYL-TRNA SYNTHETASE 81 500 IPR004516 GO:0005737
Vivi6g04149 501 PIRSF His-tRNA_synth 80 501 IPR004516 GO:0005737
Vivi6g04149 501 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 410 IPR006195 -
Vivi6g04149 501 CDD HisRS-like_core 97 403 IPR041715 -
Vivi6g04149 501 Gene3D - 409 501 IPR036621 -
Vivi6g04149 501 Pfam Histidyl-tRNA synthetase 89 393 IPR041715 -
Vivi6g04149 501 SUPERFAMILY Class II aaRS and biotin synthetases 86 407 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04149 K01892 - gmx:100793186 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04149 6 140405640 140419848 Vivi6g04149 6 140405640 140419848 ECH