Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04056 ATGGACGACGAAGAAGAACAACAAAAACTCCCAGATCTCGTAAAAGCCCTCGTCCACCATCTTCTCTCTCAAAACCTCCCCCCAAACTCCCCACCCTTAAACCCTAACTCCTCTCACTTCCGAAACTCCCTCCGTTACGCCCACCGCATCCTCTCCAGCCACCTCACTCCCTCCATAACCCCCGACGCCGCCGCCGTCGCCGAATCCATCAAACGCCGTCTCGCCACCGAAGGTAGATCCTCCGAAGCCCTCTCATTCGCTGACCTATACACCAAATTCGTTTCCAAAGCTGCCGATGTTGATAACAAGTGGGCCCTACTTCATCTCTTTAACATCATTTCTCAAGATCGTAAAACCGCTGTTAAATCTCAACTCGATGCTTCGGGTTTTCTCCCGAATTTAACTATCTCCGATAACAACAACAATGTTCCTCGCCGCATCGAAAATAAGGGATGGAGCGATGGAGTTGTTGTTCTTGCTAAGGATCCTGATAATCGTCGCGACATTGCGTTTCGCGAGTATGTGAAATTGGTTAAGGAGGAGAACGATGTGACCGAGGAGGCTATGGTGACTGATGTGCTTTATGCTTGTCAAGGAGTTGATGGTAAGTATGTGAAATATGATAATGAGAATAGATGTTATGTTTTGTTGGATTCGATTAGGGTTTCGAGGGGAACTGCGGGTATGGTTCATAGGCTTTGTGAGTTAGGGGTTTTGTTTAAGAAGGTTGTTGGGTACATTGAGCAGAGTTTGGGTCGTTTTCAGACGGAAGATGTGGGAACGGTTGGACAAGCTTTTTGTTCTGCTTTGCAGAATGAGTTGAGTGATTATTATAAGTTGTTGGCTGTGCTTGAGGCTCATTCGTCGAATCCAATTCCTTTGATGTCTGAATCTGCGAGTTCTGTTAATTATCTTTCTTTGAGGAGATTGGCTGTTTGGCTTGCTGAGCCGATGGTGAAAATGAAGTTGATGGCGGATTTGGTTGAGAAGTGTAGGGTTTTGCGCGGAGGTGCGATGGCAGGTGCAATTCACTTGCACGCGAGACATGGTGATCCGATGGTTCACGAGTTTATGAAGAGGTTGCTTCAGCGTGTGTGTTCTCCGCTTTTTGAAATGGTGAAGAGGTGGGTTTTGGAAGGGGAGTTAGAAGATATATTTACTGAGTTTTTTATTGTTGGACAGCCTGTGAAAGCTGAATCTCTTTGGAGAGAAGGATATAGGCTCCACGATGCCATGCTTCCTTCTTTTATTTCAGCTTCTCTTGCTCAGAGGATTTTGAGGACTGGAAAGTCCATAAATTTTCTGCGTGTTTGCTGTGAGGACCGCGGTTGGGCTCAAGCTGCAACTGAAGTTGCCATCGATACAGGGGCTGCTGCAAGACGGGGTGGTTTTGGCTACGGTGAAACTGATACTCTTGAGTCGTTGGTTGATGAAGCTTCCAAAAGAATTGATAAGCATCTATTGGATGTAATTTATGAGAGGTATAAATTCAAAGAGCATTGTCTAGCAATTAAGCGGTATTTATTGCTTGGCCAAGGTGATTTTGTGCAATATCTGATGGATATTGTTGGGCCTGAGCTTTCTGGGCCAGCTAACACTATAAGCTCTTTCAAAGTTGCGGGATTGCTGGAAACTGCTATTCGAGCGTCAAATGCTCAGTATGACGACCCTGACATTTTGGACAGGCTCAGGGTCAAAATGATGCCACATGAAAGCGGTGATAGGGGCTGGGATGTATTCTCACTGGAATACGATGCAAGAGTACCGCTAGACACTGTGTTCACAGAGTCTGTGATGGCTAGGTATTTAAGAATTTTTAATTTTCTCTGGAAGCTTAAAAGAGTGGAACATGCACTTATTGGAGCCTGGAAGACCTTGAAGCCAAACTGTATAACTTCCAATTCATTTATCAGATTGCAAAGTTCAGTAAAGATGCAGTTAGTTTCAGCATTGAGGCGTTGCAAAGTTCTTTGGGTTGAAATTAATCACTTCATCTCAAACTTGCAATACTATATAATGTTTGAAGTTTTGGAGATATCATGGTCAAACTTTTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCATGAGAAATATATGGATTCAATTGTAGAGAAATCTCTTCTTGGAGAACTCTCGCAGTCGCTGTACAAGTCATTAGTGGTAATATTTGATCTTATATTACGTTTCCGGAGCCATGCGGATATTCTATACGAAGGCATTCACGAGTTACAAGCAAAAATAACGGAGTCCTCCCTATCCTCTCGAGACCAGCAGAAAACACGAAAGAAATCAAAAGATAAGTCATTGGATGAAGGATCCTGGATTGCTGATGGGAGGAAAGCGTTAACACAACGTGCTGGTGAATTTCTTCGGAAAATGGAACAAGATCTAGATGCAATTACCAAGGAGTATACATCATTGCAAGAGGACTTCATTTCTCAGTTGCCTGTACAGCAGCATGTTGATCTTAAGTTTCTCTTTTTTCGTCTTGACTTCAATGATTTTTATAGGCGGGTTGTGTCGTAG 2544 0.4371 MDDEEEQQKLPDLVKALVHHLLSQNLPPNSPPLNPNSSHFRNSLRYAHRILSSHLTPSITPDAAAVAESIKRRLATEGRSSEALSFADLYTKFVSKAADVDNKWALLHLFNIISQDRKTAVKSQLDASGFLPNLTISDNNNNVPRRIENKGWSDGVVVLAKDPDNRRDIAFREYVKLVKEENDVTEEAMVTDVLYACQGVDGKYVKYDNENRCYVLLDSIRVSRGTAGMVHRLCELGVLFKKVVGYIEQSLGRFQTEDVGTVGQAFCSALQNELSDYYKLLAVLEAHSSNPIPLMSESASSVNYLSLRRLAVWLAEPMVKMKLMADLVEKCRVLRGGAMAGAIHLHARHGDPMVHEFMKRLLQRVCSPLFEMVKRWVLEGELEDIFTEFFIVGQPVKAESLWREGYRLHDAMLPSFISASLAQRILRTGKSINFLRVCCEDRGWAQAATEVAIDTGAAARRGGFGYGETDTLESLVDEASKRIDKHLLDVIYERYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSGPANTISSFKVAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALIGAWKTLKPNCITSNSFIRLQSSVKMQLVSALRRCKVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYMDSIVEKSLLGELSQSLYKSLVVIFDLILRFRSHADILYEGIHELQAKITESSLSSRDQQKTRKKSKDKSLDEGSWIADGRKALTQRAGEFLRKMEQDLDAITKEYTSLQEDFISQLPVQQHVDLKFLFFRLDFNDFYRRVVS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04056 847 Gene3D - 498 841 IPR042241 -
Vivi6g04056 847 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 10 842 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Vivi6g04056 847 Pfam Gamma tubulin complex component N-terminal 190 493 IPR041470 -
Vivi6g04056 847 Pfam Gamma tubulin complex component C-terminal 499 842 IPR040457 GO:0043015
Vivi6g04056 847 Coils Coil 796 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04056 Vivi-Chr6 138099704 138103016 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04056 K16570 - gmx:100784710 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04056 6 138099704 138103016 Vivi6g04056 6 138099704 138103016 ECH