Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04041 ATGGCTACAGGTACACCTGCAACAACCAAGAAAGGTGGAAGAGGCAAACAACCAAAAACCAAATCTGTTTCAAGGTCAACCAAAGCCGGTCTTCAGTTTCCCGTCGGCCGTATCGCTCGCTTCCTTAAAGCTGGTCGATACGCTCAGCGTGTTGGTTCTGGTTCACCGGTTTACCTCTCTGCCGTTCTTGAATACCTTTGCGCTGAGGTTTTGGAACTTGCTGGTAACGCTGCGAGGGATAACAAGAAGACGAGGATTGTACCGAGACACATTCAACTTGCTGTGAGGAACGACGAGGAATTGAGTAAATTGATGGGATCTGTCACTATTGCTAATGGAGGTGTGTTGCCTAACATTCATCAGAATTTGTTGCCTAAGAAGGTTGCTGGAAAGGGGAAAGGAGAGATTGGATCTGTTAGTCAAGAATTTTAG 432 0.4653 MATGTPATTKKGGRGKQPKTKSVSRSTKAGLQFPVGRIARFLKAGRYAQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKVAGKGKGEIGSVSQEF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04041 143 SMART h2a4 10 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 Pfam Core histone H2A/H2B/H3/H4 8 96 IPR007125 GO:0003677
Vivi6g04041 143 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g04041 143 PRINTS Histone H2A signature 107 125 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 PRINTS Histone H2A signature 79 93 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 PRINTS Histone H2A signature 21 43 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 PRINTS Histone H2A signature 50 65 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 PRINTS Histone H2A signature 65 78 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 FunFam Histone H2A 8 135 - -
Vivi6g04041 143 CDD H2A 15 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 ProSitePatterns Histone H2A signature. 29 35 IPR032458 -
Vivi6g04041 143 PANTHER HISTONE H2A 15 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi6g04041 143 Gene3D Histone, subunit A 8 134 IPR009072 GO:0046982
Vivi6g04041 143 SUPERFAMILY Histone-fold 24 127 IPR009072 GO:0046982
Vivi6g04041 143 Pfam C-terminus of histone H2A 99 133 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04041 Vivi-Chr6 137920887 137921602 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04041 K11251 - gmx:100818215 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04041 6 137920887 137921602 Vivi6g04041 6 137920887 137921602 ECH