Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04016 ATGTTGTTTTTCTCGTATTTCAAAGATTTGGTGGGAAGAGAAGTGACGGTAGAACTCAAGAACGATTTGGCCATCAGAGGGACATTGCATTCTGTTGATCAATACCTCAACATCAAGCTCGAAAATACTCGTGTTGTTGATCAAGACAAGTACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGATCGGTGGTGAGATATGTGCAATTGCCTCCAGAAGGTGTGGACATTGAACTATTGCACGATGCTACAAGGAGAGAGGCCCGGGGTGGTTGA 282 0.4468 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04016 93 FunFam U6 snRNA-associated Sm-like protein LSm2 1 93 - -
Vivi6g04016 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
Vivi6g04016 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397
Vivi6g04016 93 Gene3D - 1 92 - -
Vivi6g04016 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 91 IPR016654 GO:0006397
Vivi6g04016 93 SMART Sm3 5 72 IPR001163 -
Vivi6g04016 93 CDD LSm2 2 90 IPR016654 GO:0006397
Vivi6g04016 93 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723
Vivi6g04016 93 Pfam LSM domain 7 71 IPR001163 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04016 K12621 - jre:109010925 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04016 6 137303291 137307235 Vivi6g04016 6 137303291 137307235 ECH