Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04013 ATGACAAATCTCTTGCCATCATTTTCATTCTCAGTGATTCCACTTAATCAGCATAAATATGAAACCAAATGCTCCTTTTTTCGTACATCCTTTACCTGCATTCAGCATCAGAACCAACTTAGTAAAAATTTGCAAGATCTCATAATCCCCTTTTCTCAGAATCTCACTTCAAAACTGTGTGCCACGTCATCAAGGTTGTCTGTAGAAGAAACTGAGCAGAAACTCATTCCTTTCACACAATCAGAAGACATCAAAACAGCATTGCCTTATTTGTTTCGAACAGAAAAAGGTGAAGGTTTGGTCAAAGTTTATGTAAAAAAGAAAAATGATACTTATTTTGTTTATATTGAGGTTTCTTCTTTAGAGTTAAGTAATGTTGAAAGGGAAACATTTGTCTTGTGTTGGGGTGTGTATAGTGATGATTCCTCAAGTTTGGATTCTGGGAAAGGGATGAATGTGAGTCCCTTGGTGAAAAATTCTCTTGGAAAATTTTCAGTTGAACTGGAATTTGATGTTGAACAAGTTCCTCTGTACTTGTCTTTTTTGTTGAGATTGTCTGGACTGGAAATCAGAACCCATCTGAAAAGGAATTTTTGTGTGCCTGTTGGTTTTCTTCGGGGTCGCTCGTCTCCATTGGGGATCTCTTTTTCCCCGGATGGGTCTATCAATTTCGCAGTTTTTTCAAGGCATGCAGAGGGTGTGGTATTGTGTTTGTATGATAACAATGATGACCCTGGTGTGAAGAAGCCTGCTTTGGAGCTTGATCTTGATCCTTATGTCAATAGGTCAGGTGATATTTGGCATATCTCTTTGGAGAGTGCAAAGACTTTTGTGAGCTATGGTTATCGCTTTAGAGGAGCTAACAGTGATAACAGTTATGCTGAGTGTGTTGTTTTGGACCCTTACGCTAGAATTGTTGGGAGTTCTTTTCCTAATGGTATTGGGTCCGTGAAGAACCTTGGATTTTTGAGAAAGGAACCTGCTTTTGATTGGGGTGATGATTGCCATCCCAATTTGGACATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTTTACCGAGCACGAGTCGAGTCAACTTTCTGGTGATTTAGCTGGGACATTTTCTGGTTTGGCTAAAAAGTTGCAGCATTTTAAAGATCTGGGTGTGAATGCTGTCCTGTTGGAGCCAGTTTTCACGTTTGATGAGGAAAAGGGGCCTTATTTTCCTTGTCACTTTTTCTCTCCAATGAACCTCTATGGACCTTCTGGTGATCCTCTATCTACTATAAACTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTATAATGGAAGTTGTTTTCTCCAATACTGCCGAGGTTGGTGCTCTGCAAGGTATTGATGACTTATCTTACTATTATGCAAACGGTGTTGGTGGCTTAAAGGTACCCAGTGCTTTGAATTGTAACTATCCTATAATGCAAAATTTGATTTTGGATAGCCTTAGGCATTGGGTAACTGAGTTTCACATTGATGGCTTTTCATTTGTAAATGCTTCACATTTGTTGAGAGGGTATCATGGAGAATACTTGTCTCGACCTCCATTGGTCGAAGCAATTGCTTTTGATCCGATACTGTGGAAAACTAAAATCATTGCAGATTGCTGGGATCCCAATGAGATGGAACCGAAAGAGGTTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTCCGCAGTGATGTGAGGAATTTTCTTAGAGGTGAAAGTCTTCTTAGCAACCTTGCAACACGACTTTGTGGGAGCGGAGACATGTATTCTGATGGAAGAGGCCCTGCGTACTCTTTTAATTACGTTGCCGGTAATTTTGGACTTTCACTTGTGGACTTAGTCAGCTTCAGCGGTGCGGCTGAGTTGAGTTGGAATTGCGGAGAAGAAGGACCTACTAATAGTACTGATGTCCTTGAAAGACGACTCAAACAAATCCGCAATTTCCTATTTATCTTGTTTGTGTCATTAGGAGTACCTATTTTGAACATGGGAGATGAGTGTGGTCACTCCTCTGGTGGTTCTCTTGCATATGGTAACACAAAACCCTTCAATTGGGCTGCTTTGAAAACAGGTTTTGGTAAACAAACCACCCAATTCATTTCCTTTTTGACTTCGTTGAGAACACGGCGGAGTGATCTTCTTCAAAGTAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGCGAGGAGTTGATGAAGCTCCACCAAGATGGGAAGATCCATCCTGCAAGTTCCTAGCCATGACTTTGAAGGCTGAAAGAAACGAGCTTCAAGAGAGCTCTGTATCTTCAGATATATTAGGGGATTTATTTGTTGCTTTCAATGCAGATGATCGTCCAGAAACTGTAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCATAATCGACACTGCTCTTCCATTTCCTGGGTTTTTCTTGAACAATGGTGATGTCCTAGAGGAAATATCAGGTTTGTCTACTTACGAAATGAAGTCTTACAGCTGCATTTTGTTTGAGGCAAATATTAGTCCTAGTTAG 2562 0.4048 MTNLLPSFSFSVIPLNQHKYETKCSFFRTSFTCIQHQNQLSKNLQDLIIPFSQNLTSKLCATSSRLSVEETEQKLIPFTQSEDIKTALPYLFRTEKGEGLVKVYVKKKNDTYFVYIEVSSLELSNVERETFVLCWGVYSDDSSSLDSGKGMNVSPLVKNSLGKFSVELEFDVEQVPLYLSFLLRLSGLEIRTHLKRNFCVPVGFLRGRSSPLGISFSPDGSINFAVFSRHAEGVVLCLYDNNDDPGVKKPALELDLDPYVNRSGDIWHISLESAKTFVSYGYRFRGANSDNSYAECVVLDPYARIVGSSFPNGIGSVKNLGFLRKEPAFDWGDDCHPNLDMEKLVVYRLNVKRFTEHESSQLSGDLAGTFSGLAKKLQHFKDLGVNAVLLEPVFTFDEEKGPYFPCHFFSPMNLYGPSGDPLSTINSMKEMVKTMHANGIEVIMEVVFSNTAEVGALQGIDDLSYYYANGVGGLKVPSALNCNYPIMQNLILDSLRHWVTEFHIDGFSFVNASHLLRGYHGEYLSRPPLVEAIAFDPILWKTKIIADCWDPNEMEPKEVRFPHWMRWAEINTNFRSDVRNFLRGESLLSNLATRLCGSGDMYSDGRGPAYSFNYVAGNFGLSLVDLVSFSGAAELSWNCGEEGPTNSTDVLERRLKQIRNFLFILFVSLGVPILNMGDECGHSSGGSLAYGNTKPFNWAALKTGFGKQTTQFISFLTSLRTRRSDLLQSRSFLKEENIEWRGVDEAPPRWEDPSCKFLAMTLKAERNELQESSVSSDILGDLFVAFNADDRPETVVLPLPPEGMSWYRIIDTALPFPGFFLNNGDVLEEISGLSTYEMKSYSCILFEANISPS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04013 853 PANTHER GLYCOGEN DEBRANCHING ENZYME 168 849 - -
Vivi6g04013 853 CDD AmyAc_plant_IsoA 340 728 IPR044096 GO:0019156|GO:0019252
Vivi6g04013 853 SUPERFAMILY (Trans)glycosidases 327 725 IPR017853 -
Vivi6g04013 853 SUPERFAMILY E set domains 207 337 IPR014756 -
Vivi6g04013 853 Gene3D - 736 852 IPR013780 -
Vivi6g04013 853 SMART aamy 348 720 IPR006047 GO:0005975
Vivi6g04013 853 Gene3D Immunoglobulins 200 317 IPR013783 -
Vivi6g04013 853 Gene3D Glycosidases 325 735 - -
Vivi6g04013 853 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 211 303 IPR004193 GO:0004553|GO:0005975
Vivi6g04013 853 CDD E_set_GDE_Isoamylase_N 210 348 IPR044505 -
Vivi6g04013 853 Pfam Alpha amylase, catalytic domain 368 454 IPR006047 GO:0005975
Vivi6g04013 853 SUPERFAMILY Glycosyl hydrolase domain 735 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04013 Vivi-Chr6 137285136 137288080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04013 57 848 Glycoside Hydrolase AT1G03310 56.448 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04013 K01214 - gmx:100777953 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04013 6 137285136 137288080 Vivi6g04013 6 137285136 137288080 ECH