Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04000 ATGAAGCTCGTTAGGTTTCTGATGAAGTTGAACAACGAAACTGTCTCAATCGAGTTAAAGAATGGTACTATTGTTCACGGCACCATTACAGGTGTTGATATTAGTATGAATACACATTTGAAAGCCGTTAAACTAACCCTAAAGGGGAAAAATCCTGTTACTCTGGATCATCTCAGTGTGAGAGGCAACAACATTCGTTATTATATCCTTCCCGACAGCTTGAATCTGGAAACTTTACTGGTTGAAGAGGCTCCTAGGGTCAAACCTAAGAAGCCAACTGCTGGGGGAAAGCCGTTGGGGCGAGGACGGGGGAGAGGACGTGGACGCGGTCGTGGTCGTGGCCGTTAA 348 0.4598 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGGKPLGRGRGRGRGRGRGRGR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04000 115 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 4 114 IPR027141 GO:0006396
Vivi6g04000 115 MobiDBLite consensus disorder prediction 83 115 - -
Vivi6g04000 115 Gene3D - 1 49 - -
Vivi6g04000 115 Gene3D - 50 82 - -
Vivi6g04000 115 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723
Vivi6g04000 115 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Vivi6g04000 115 SMART Sm3 5 70 IPR001163 -
Vivi6g04000 115 Pfam LSM domain 5 69 IPR001163 -
Vivi6g04000 115 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Vivi6g04000 115 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04000 Vivi-Chr6 137157824 137160370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04000 K11087 - cpap:110814760 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04000 6 137157824 137160370 Vivi6g04000 6 137157824 137160370 ECH