Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03989 ATGGTGATGAGTGTTCAATTTCAACTATCATCATGCTTATGGACTCCCAACTCTCCTTCTCCACAATTTTCCGGAAAATCTCCTCCCAACCGTGGAAGATTCTCCACTTCATCTCTCGCTGCCACACCAACACTCTCATCTCAATCTCCCACCATTCAGATAATTGGCAACAACACATTTGATGGTAACTTAGGAGAGACTGATCTTTGGACTGGTATTGACACTGATCTTTATCACTGGACAAAGGCTTTGCGTCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAGGAACTGAAGGAACAACTTAAGTTGATGGATGTTGTCATAGAGGTTCGCGACGGCCGTATTCCGTTGTCTACAACTCATCCACAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTCTGGTTTTAAATAGAGAAGACATGATATCAACTGCAGATCGAAATGCTTGGGCAGAATATTTTACTAAGCTTGGAACAAAGGTTGTCTTCTCCAATGGGCAACTTGGAATGGGTACTTTGAAGCTAGGCCGGTTAGCAAAGGAATTGGCAGCTGATGTAAATGTTAAACGGAGGGCCAAAGGATTACTTCCTCGTCCGGTTCGAGCTGGAATTGTTGGATACCCTAATGTTGGAAAATCATCTCTGATCAACCGTTTGTTAAAGCGAAGAGTGTGCTCAGCAGCTCCAAGGCCAGGAGTTACAAGAACATTGAGGTGGATTCGATTTGGGAAAGATCTTGAATTGCTGGATTCTCCTGGGATACTTCCAATGCGAATCAGTGACCAGTCAGCTGCTATAAAACTTGCTATATGTGATGACATTGGAGAGAAATCCTATGATGTGGATGATGTTGCTGCAATTCTTGTACAGATGCTTACAAAGCTTCCAACTGTAGGTCGAGATGTACTTTGTAAACGGTACAAGTTTCACGTAGACAGTGAATGTGGTAAAATATTCGTAGAGAAGCTTGCGCTTCATTTGTTCAATGGAGATGTTCATCAAGCTGCATACCGTATCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA 1092 0.4304 MVMSVQFQLSSCLWTPNSPSPQFSGKSPPNRGRFSTSSLAATPTLSSQSPTIQIIGNNTFDGNLGETDLWTGIDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTTHPQMDLWLGNRKRILVLNREDMISTADRNAWAEYFTKLGTKVVFSNGQLGMGTLKLGRLAKELAADVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRVCSAAPRPGVTRTLRWIRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGEKSYDVDDVAAILVQMLTKLPTVGRDVLCKRYKFHVDSECGKIFVEKLALHLFNGDVHQAAYRILSDFRKGRFGWTALERPPR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03989 363 FunFam DAR GTPase 3 chloroplastic 87 260 - -
Vivi6g03989 363 FunFam Mitochondrial GTPase 1 265 353 - -
Vivi6g03989 363 PRINTS GTP1/OBG GTP-binding protein family signature 253 268 IPR006073 GO:0005525
Vivi6g03989 363 PRINTS GTP1/OBG GTP-binding protein family signature 207 227 IPR006073 GO:0005525
Vivi6g03989 363 Pfam 50S ribosome-binding GTPase 207 267 IPR006073 GO:0005525
Vivi6g03989 363 Gene3D - 87 260 IPR027417 -
Vivi6g03989 363 MobiDBLite consensus disorder prediction 18 44 - -
Vivi6g03989 363 Gene3D - 265 353 IPR023179 -
Vivi6g03989 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 270 IPR027417 -
Vivi6g03989 363 CDD YlqF 89 260 - -
Vivi6g03989 363 NCBIfam ribosome biogenesis GTPase YlqF 87 359 IPR019991 -
Vivi6g03989 363 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 98 262 IPR030378 GO:0005525
Vivi6g03989 363 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 76 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03989 Vivi-Chr6 136913994 136918355 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03989 K19828 - gmx:100784201 576.63