Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03962 ATGGACGAAGAAGTTGCCGCAGACACCAGAAAAGACACCGAAGTAGCACCGGCACTCATCGCCGTCCACCCAGACGGCCACTCCGTCGCCGTAGCAGTCGGACCGGAGCTCCGCGTCTTCAACCTCCTTGGCAATTCTGCAGTTTCTCTACTCGACGACTCCGTCTCCGGTGAACAAACCTCTCATAAAGACAATATCAGAGCCATTCGATTCGGAGCGAAAGGAAAACTGTTCGTATCCGCCGGTGATGATAAAACCCTAAAAATTTGGTCGACGCAATCGTGGCAGTGCGTTTCCACCGTGTCGTCGGAGAAGAGAGTTACTGCTGTTGCTATAAGCAATGACGGATTGCACGTGTGTTTTGCTGATAAATTCGGTCTCGTTTGGGTTGTGGATCTTAACCAAACTTCGCAGGATAAGAAACCAACACCAACGGCGCTTCTGTCGCATTATTGTAGCATAATCACTAGCTTGGAGTTTTCGCCAGATAATCGGTTTATTATTAGTGCTGATAGGGATTTCAAAATTCGTGTTACTAATTTCCCCAAGAATCTCTTAAATGGAGCTCACGAGATTCAGAGTTTTTGTCTTGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTTGTTCCAGCTCAGGAAAGCCCTGGTAGTCTTCTTCTATCTGGCAGTGGCGATTCCACAGTACGATTGTGGGATATCTCCTCTGGAGCACTCTTGGATACTTGTGAGGTTGCAATTAAGGCAGGGCTTCTAGAGTCTAATGGTAATGCTGAGGAGCATGACAATGCTGTTACTGATTTATGTACCACCCTGGATGGTTTGCTTGTTGCGGTGGCAATTCAGAGCTTGCGTGGAGTTGTATTGTTGAGTTACAAAGTTTCTGCCCAAACACTTTCTTTTGCCAAGGTTGTTTCTATTGCAGGAGAAACCTTTATCCCTACCTGCTTGGCAAACAGCCCTCCTACGAAGGAATTGTGGATGGTTACAGGTGTCTCTAGTTTACCTGGTTATGATTATCCGTCTTTGGCTCGTGTCGTAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCTGGAAGACGATAAGATTCCTGGGGGAGAAAAGCTGCTAGAAACATTACAAGGAACCACATCTGTTGACGGTAATGCTTTTTTGGCAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCATTATCCGTTCGAGAATAGAGAATATAGAAAGAAAACCAGAAATGATAAAAAACTCAAGGAATAA 1278 0.4523 MDEEVAADTRKDTEVAPALIAVHPDGHSVAVAVGPELRVFNLLGNSAVSLLDDSVSGEQTSHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSTQSWQCVSTVSSEKRVTAVAISNDGLHVCFADKFGLVWVVDLNQTSQDKKPTPTALLSHYCSIITSLEFSPDNRFIISADRDFKIRVTNFPKNLLNGAHEIQSFCLGHTEFVSCLAFVPAQESPGSLLLSGSGDSTVRLWDISSGALLDTCEVAIKAGLLESNGNAEEHDNAVTDLCTTLDGLLVAVAIQSLRGVVLLSYKVSAQTLSFAKVVSIAGETFIPTCLANSPPTKELWMVTGVSSLPGYDYPSLARVVVISGIDVEQEPVVLEDDKIPGGEKLLETLQGTTSVDGNAFLAAAEAVKAAMCNLLIKKHYPFENREYRKKTRNDKKLKE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03962 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 236 - -
Vivi6g03962 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Vivi6g03962 425 Pfam WD domain, G-beta repeat 149 178 IPR001680 GO:0005515
Vivi6g03962 425 Pfam WD domain, G-beta repeat 60 91 IPR001680 GO:0005515
Vivi6g03962 425 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Vivi6g03962 425 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 105 359 - -
Vivi6g03962 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Vivi6g03962 425 PANTHER WD40 REPEAT PROTEIN 4 16 417 IPR028884 GO:0036265
Vivi6g03962 425 SMART WD40_4 94 132 IPR001680 GO:0005515
Vivi6g03962 425 SMART WD40_4 188 232 IPR001680 GO:0005515
Vivi6g03962 425 SMART WD40_4 52 91 IPR001680 GO:0005515
Vivi6g03962 425 SMART WD40_4 141 180 IPR001680 GO:0005515
Vivi6g03962 425 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 417 IPR028884 GO:0036265
Vivi6g03962 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 241 IPR001680 GO:0005515
Vivi6g03962 425 Gene3D - 16 104 IPR015943 GO:0005515
Vivi6g03962 425 Gene3D - 105 360 IPR015943 GO:0005515
Vivi6g03962 425 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 16 104 - -
Vivi6g03962 425 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Vivi6g03962 425 SUPERFAMILY WD40 repeat-like 19 349 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03962 Vivi-Chr6 136423622 136426794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03962 60 239 Miscellaneous Gene Families AT5G08390 24.444 7.16e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03962 K15443 - gmx:100786310 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03962 6 136423622 136426794 Vivi6g03962 6 136423622 136426794 ECH