Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03921 ATGGCTATTGCACTGAAATCATCATGCTTCTTGCAATTGAAAAAAGCTGAAACCGGTTTCAATAATCTCAGTTTTTCCTCTAACAATGTTTCAGTAATGTCAGTTAAAAGATTCACTTCGGTTTCTGCTACTGCTAACAGGACTATTGAAGCAGTTAGCATCTCTGAAACATTCAAAAGCCTCAAGAAACAAGGCAAAGTGGCATTGATCCCATACATCACAGCTGGTGATCCTGATCTTTCAACCACAGCAGAAGCATTGAAAGTTCTTGATTCATGTGGATCTGACATTATTGAACTCGGTGTTCCATACTCCGATCCTTTAGCAGATGGTCCTGTTATCCAGGCTGCTTCTACAAGATCTTTAGCAAGAGGAACCGATTTTGATTCGATTATCTCTATGTTGAAGGAGGTCGTTCCAGAATTATCTACTCCAATTGCATTGTTTACTTATTACAATCCAATTCTGAAACGCGGTACTGAGAGATTTATGTCCATTGTAAAAGACACTGGCATTCATGGACTTGTAGTCCCGGATGTTCCTCTGGAGGAGACCGAAACTTTAAGGAAAGAAGCTAAGAAGAATGGAATTGAACTGGTACTCCTCACAACGCCTACCACTCCAACAAACCGAATGGAGGCCATTGCTGATGTTGCAGAAGGATTTGTCTATCTTGTGAGTTCTTTGGGGGTCACTGGAACTCGAGCATCAATTAGTGGTAAAGTTCAGGCTCTTTTGAAAGAAATCAAAGAGGCAACACGTAAGCCTGTGGCAGTTGGCTTCGGGATATCAACAGCCGAGCAAGTGAAGCAGGTGGCGGGATGGGGTGCTGATGGTGTGATTGTTGGAAGTGCTATGGTGAAGTTGCTTGGTGATGCCAAAACTCCTCAAGAGGGATTGAAAGAACTGGAAAATTTCACTCTCTCCTTAAGATCAGCACTTGATTGA 948 0.4241 MAIALKSSCFLQLKKAETGFNNLSFSSNNVSVMSVKRFTSVSATANRTIEAVSISETFKSLKKQGKVALIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAASTRSLARGTDFDSIISMLKEVVPELSTPIALFTYYNPILKRGTERFMSIVKDTGIHGLVVPDVPLEETETLRKEAKKNGIELVLLTTPTTPTNRMEAIADVAEGFVYLVSSLGVTGTRASISGKVQALLKEIKEATRKPVAVGFGISTAEQVKQVAGWGADGVIVGSAMVKLLGDAKTPQEGLKELENFTLSLRSALD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03921 315 FunFam Tryptophan synthase alpha chain, chloroplastic 52 315 - -
Vivi6g03921 315 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 48 314 IPR002028 GO:0004834|GO:0006568
Vivi6g03921 315 ProSitePatterns Tryptophan synthase alpha chain signature. 98 111 IPR018204 GO:0004834
Vivi6g03921 315 NCBIfam tryptophan synthase subunit alpha 58 310 IPR002028 GO:0004834|GO:0006568
Vivi6g03921 315 Pfam Tryptophan synthase alpha chain 58 308 IPR002028 GO:0004834|GO:0006568
Vivi6g03921 315 CDD Tryptophan_synthase_alpha 68 311 IPR002028 GO:0004834|GO:0006568
Vivi6g03921 315 SUPERFAMILY Ribulose-phoshate binding barrel 54 293 IPR011060 -
Vivi6g03921 315 Hamap Tryptophan synthase alpha chain [trpA]. 64 313 IPR002028 GO:0004834|GO:0006568
Vivi6g03921 315 Coils Coil 235 255 - -
Vivi6g03921 315 Gene3D Aldolase class I 52 315 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03921 Vivi-Chr6 135487301 135489459 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03921 K01695 - gmx:100808400 461.07