Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi6g03885 | ATGTCGAACCCTCAAGACCAGAAACCCTGGAAAGCAGAATACGCCAAATCAGGACGTTCATCGTGCCGAACCTGCAAAAGTCCCATCGCCAGCGAAAAGCTCCGACTCGGCAAGATGGTTCAATCTTCCAAGTTCGACGGCCTCATGCCCATGTGGCATCACGCTGACTGCGTGTTGAAGAAATCCAATCAGATAAAATTAGTTGATGATGTTGAAAACCTAGAGACGCTTCGCTGGGAAGATCAGCAGAAGATTAGAACGTACATTGAGAGCGGCGGCGGTGGTGGTTCTACGTCGAAGTTGAAATCGAAGTCGAGTGCCGCATCGGCGTCTAAGTCGAGTGCTAGCAAGAATGTTGAATATGGTATTGAGGTTTCACAAACTTCCCGTGCTGCTTGTAAGGATTGTGGTCAGAAAATTATCAAAGGAGAGGTTCGCATATCTACTAAGCCTGACGGTCAAGGTCCCAGGGGTTTGGCTTGGCACCACGCTAAGTGTCTCTTGGAACTATCACCATCAATTCAAGTCGATAACTTGTCCGGATGGACTAGTCTCTCAACTTCTGATCAATCAGCTGTCAATGACTTAGCTATGAAAGGCCATCCTACAAACAAGAGAGGTGGTAGTGGTACAAATGTTGAAGCTGATGAGGTTAAAGCACCCATACAGCAATCCTCTTCCAGAGGTGGCACGAAACGGGGGAAAGATGCAGAGGGTGAGCAGAAGTCAAAAGCTGCTAAGGTCAAGGGAGACGTGTCTGTGGGCAGGGAAGCGGTAGTGAACAATGCTGATGATTCCGGGGAGGCAGGTGGTCTTGAGAATAAACTAGAGGCGCAAAGCAAAGAACTGTGGGCTTTGAAGGACGACCTTAAAAAGCACGTGACCACAGCAGAAATGCGTGAGATGCTGGAACTCAATGATCAAGATTCAACTGGATCAGAGCTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAAGACTTTGTCACTGCCCACTATGTTCTGGGTTTCTGCGTTATTCTGGAGGAATGTACCGGTGTAACGGTTACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCTGTGAACCAAAACGTACTGAAGGGAAGTGGAAAATCCCAGAGGAAACAGATAATCAGTATCTTAAAAAGTGGTTCAAATCTCAAAAAGGAAAGAAACCAATTAGGATATTGCCTCCGCCATCTTCAAGGACTTCTGCTGAAAGTTCAATTTCTGCAGGCAAACATCAATCATCAAACAGTGAAAGTTTGGCAGATTTAAAAGTTGCAATCTGTGGATTACCTAAACCTTCTATTGATGAATGGAAACACAAAATTGACGATATAGGTGGAGTTTTTCATGCAAAAGTGAAGAAAGATACTAGCTGCTTGGTGGTCAGTGGAGCGCTCAAGGACGAAGCTGAGATGCAGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAAGAAGAAGCTTCCATTTGATAGGTACAAAGTTGAAATGATTGGTGAGACTTCTAGCATGGTCACCGTCAAAGTGAAGGGGCAAAGTGCTGTTCACGATGCTTCGGGACTACAGGATTCTGGCCACATACTGGAGGATGGGAAAAGTATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATCCTTCAAATAATTGAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGTCGAGTGGGAAGTGACAAGATTGGAGGGTCCAAACTGGAAGACATGTCGAAATCTGATGCTATCAGGGAATTCAAACGACTATTCTATGAGAAAACTGGAAACTCTTGGGAGGCCTGGGAACAAAAAACTATTCAGAAGCAACCTGGAAGATTCTTCCCATTGGAAATTGATTATGGAGTTGACAAGCAAGTCTCAAAAAAGAAAAAAAACAACACAGACAGCAAACTACCCCCTCGGTTGAGAGAGTTGATGATGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAGTTTGAGATCAATATGTCCGAAATGCCTCTTGGGAAACTCAGCAAAAGTAATATCCAAAAGGGTTTTGAAGCACTAACAGATATACAGAATCTTTTTACAAGTAGCAATCCGGATTCATCCGTCAGAGATAGCTTGCTTATTGATGCCAGCAATCGGTTCTTCACTGTAATCCCTTCTATTCATCCACATATCATTAGGGACGAGGATGATTTTAAGGCAAAGGTAAAAATGTTGGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGGGATGACTCCATTGATGATAATTATAAGAAGCTCCGCTGTGCTATATCTCCACTTCCTCATGACAGTGAAGATTTTCGATTAGTCGAGAAGTATCTACATAATACTCATGCCCCCACCCACGTGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGACACGGTGAATTCGATAAATATGCTCCTTACAGGGACAAAGTTGGTAACAGAATGCTCTTATGGCATGGTTCTAGGTTGACGAATTTTGTGGGCATTCTTAATCAAGGACTCAGAATTGCACCTCCGGAAGCCCCTGCAACCGGATACATGTTTGGCAAAGGGATTTATTTTGCTGACCTTGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCCTTAGGAAGTGTCTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCGGAAGGAAAACATTCTACTAAAGGACTGGGAAAGAAAATGCCCCAGGAATCAGATTATGTAAAGTGGAGAGGTGATGTCGTTGTTCCTTGTGGGAAACCAGTGTCATCAAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTCTATAATACTTCTCAAGTTAAACTGCAATTCTTGCTGAAGGTGAGGTTCCATCACAAGAAATGA | 3036 | 0.4305 | MSNPQDQKPWKAEYAKSGRSSCRTCKSPIASEKLRLGKMVQSSKFDGLMPMWHHADCVLKKSNQIKLVDDVENLETLRWEDQQKIRTYIESGGGGGSTSKLKSKSSAASASKSSASKNVEYGIEVSQTSRAACKDCGQKIIKGEVRISTKPDGQGPRGLAWHHAKCLLELSPSIQVDNLSGWTSLSTSDQSAVNDLAMKGHPTNKRGGSGTNVEADEVKAPIQQSSSRGGTKRGKDAEGEQKSKAAKVKGDVSVGREAVVNNADDSGEAGGLENKLEAQSKELWALKDDLKKHVTTAEMREMLELNDQDSTGSELDLRDRCADGMMFGRLCHCPLCSGFLRYSGGMYRCNGYISEWSKCSYSTCEPKRTEGKWKIPEETDNQYLKKWFKSQKGKKPIRILPPPSSRTSAESSISAGKHQSSNSESLADLKVAICGLPKPSIDEWKHKIDDIGGVFHAKVKKDTSCLVVSGALKDEAEMQKARRMKIPIVREDYLVDCMERKKKLPFDRYKVEMIGETSSMVTVKVKGQSAVHDASGLQDSGHILEDGKSIYNTTLNMSDLSTGINSYYILQIIEEDKGSDCYVFRKWGRVGSDKIGGSKLEDMSKSDAIREFKRLFYEKTGNSWEAWEQKTIQKQPGRFFPLEIDYGVDKQVSKKKKNNTDSKLPPRLRELMMMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFTSSNPDSSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKAKVKMLEALQDIEIASRLVGFDANRDDSIDDNYKKLRCAISPLPHDSEDFRLVEKYLHNTHAPTHVDWSLELEEVFSLERHGEFDKYAPYRDKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGSVYELKKAKYMDKPPEGKHSTKGLGKKMPQESDYVKWRGDVVVPCGKPVSSNVKASELMYNEYIVYNTSQVKLQFLLKVRFHHKK | 1011 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi6g03885 | 1011 | Pfam | PADR1 (NUC008) domain | 319 | 369 | IPR012982 | GO:0008270 | |
| Vivi6g03885 | 1011 | ProSiteProfiles | BRCT domain profile. | 421 | 511 | IPR001357 | - | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 404 | 421 | - | - | |
| Vivi6g03885 | 1011 | Gene3D | - | 796 | 1011 | - | - | |
| Vivi6g03885 | 1011 | ProSiteProfiles | Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. | 263 | 402 | IPR047572 | GO:0008270 | |
| Vivi6g03885 | 1011 | Pfam | WGR domain | 551 | 629 | IPR008893 | - | |
| Vivi6g03885 | 1011 | SUPERFAMILY | WGR domain-like | 518 | 644 | IPR036930 | - | |
| Vivi6g03885 | 1011 | CDD | parp_like | 662 | 1006 | - | - | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 654 | 795 | - | - | |
| Vivi6g03885 | 1011 | Gene3D | - | 113 | 220 | IPR036957 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | Gene3D | - | 2 | 112 | IPR036957 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 796 | 1011 | - | - | |
| Vivi6g03885 | 1011 | SMART | BRCT_7 | 423 | 501 | IPR001357 | - | |
| Vivi6g03885 | 1011 | SMART | PADR1_2 | 317 | 370 | IPR012982 | GO:0008270 | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 92 | 113 | - | - | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 4 | 106 | - | - | |
| Vivi6g03885 | 1011 | Gene3D | - | 330 | 389 | IPR038650 | - | |
| Vivi6g03885 | 1011 | Gene3D | - | 651 | 795 | IPR036616 | GO:0003950 | |
| Vivi6g03885 | 1011 | SMART | zf_PARP_3 | 124 | 198 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | SMART | zf_PARP_3 | 13 | 90 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 393 | 421 | - | - | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vivi6g03885 | 1011 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 119 | 206 | - | - | |
| Vivi6g03885 | 1011 | Gene3D | - | 259 | 328 | - | - | |
| Vivi6g03885 | 1011 | ProSiteProfiles | PARP alpha-helical domain profile. | 661 | 779 | IPR004102 | GO:0003950 | |
| Vivi6g03885 | 1011 | PANTHER | DNA LIGASE | 120 | 1009 | - | - | |
| Vivi6g03885 | 1011 | SUPERFAMILY | Domain of poly(ADP-ribose) polymerase | 662 | 796 | IPR036616 | GO:0003950 | |
| Vivi6g03885 | 1011 | PIRSF | NAD_ADPRT | 3 | 1011 | IPR008288 | GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287 | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 419 | 520 | - | - | |
| Vivi6g03885 | 1011 | Pfam | BRCA1 C Terminus (BRCT) domain | 426 | 498 | IPR001357 | - | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 197 | 250 | - | - | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 257 | 328 | - | - | |
| Vivi6g03885 | 1011 | ProSiteProfiles | Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. | 10 | 93 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | FunFam | Poly [ADP-ribose] polymerase | 329 | 390 | - | - | |
| Vivi6g03885 | 1011 | Gene3D | BRCT domain | 416 | 518 | IPR036420 | - | |
| Vivi6g03885 | 1011 | ProSiteProfiles | Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. | 121 | 195 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | Pfam | Poly(ADP-ribose) polymerase catalytic domain | 806 | 1007 | IPR012317 | GO:0003950 | |
| Vivi6g03885 | 1011 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 7 | 97 | - | - | |
| Vivi6g03885 | 1011 | CDD | WGR_PARP1_like | 541 | 646 | - | - | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 89 | 113 | - | - | |
| Vivi6g03885 | 1011 | Pfam | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | 124 | 195 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | Pfam | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | 13 | 89 | IPR001510 | GO:0003677|GO:0008270 | |
| Vivi6g03885 | 1011 | SUPERFAMILY | BRCT domain | 422 | 511 | IPR036420 | - | |
| Vivi6g03885 | 1011 | ProSiteProfiles | PARP catalytic domain profile. | 786 | 1011 | IPR012317 | GO:0003950 | |
| Vivi6g03885 | 1011 | SMART | WGR_cls | 551 | 634 | IPR008893 | - | |
| Vivi6g03885 | 1011 | SUPERFAMILY | ADP-ribosylation | 795 | 1010 | - | - | |
| Vivi6g03885 | 1011 | MobiDBLite | consensus disorder prediction | 231 | 250 | - | - | |
| Vivi6g03885 | 1011 | Pfam | Poly(ADP-ribose) polymerase, regulatory domain | 662 | 792 | IPR004102 | GO:0003950 | |
| Vivi6g03885 | 1011 | ProSiteProfiles | WGR domain profile. | 540 | 639 | IPR008893 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi6g03885 | Vivi-Chr6 | 134776070 | 134786220 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi6g03885 | K24070 | - | gmx:100815900 | 1649.8 |