Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03852 ATGGACAAATCCAAGCTAGCTCTATTCGGCGAGAAGCTCAAAACCAACAGCGCCAATCTGAGCCGAATCGTCAGCGGCAAAATGAAGGAAATACTCCAAACTCCAACTCCAGAATCAAAGATGGTCGACGAAGCAACGTCGGAGACATTAGAGGAACCGAATTGGGGAATGAATCTGAGGATATGCGGGCTTATCAACTCCGACGAGTTTAACGGTTCGGAGGTGGTGAAGGCGATCAAGAGGAGGATTAATCAGAAGAGTCCTGTTGTTCAGAAACATTGCCTTGATTTGTTGGAGACTTGTGCGATGAATTGTGATAAGGTGTTTTCGGTTATTGCGTCTGAGAAGGTTCTGGAGGATATGGTTAGGTTGATTGATAATCCGCAGGTGGAGCAGAGTAATAGGACGAGGGCTTTGCAGTTGATTAGGGCTTGGGGTGAATCTGAGGATATTGCTTATCTTCCTGTTTTCAGTCAAACCTATTTGAGTTTGAAAGGAAGGGGTGAATCACTTGACACGGCGGGAGGAAATTCACCACCAATTCCGTATGCCACAGAGTCCCATACTTACCAACAATCTTTAAATCCCCCTGAAAGATACCCAGTTCCAGAAGCAGGGTTACGTGCTCTTGCTCTGGATGACTCAGAAGCTTTCTTTACTGACCACCAACCCGTTTCTGTTGAAGAGAAGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTTGAAGTTCTCTCTAGCATATTAAATTCTGAGGCAGAACCAAAACCTTTAAAGGAAGAATTAACTTTGAGTCTGCTGGATAAGTGCAAGCAATCACTTTATGTTATCAAGGAGATTGTGCAAAGCACAACAAATGATGAAGAAACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAGCAGTTGGTTTCTAAGTATGAGGAGTTGGAAGCTTCTCAAAGTTTAGGGGAACAACAAACACAAAATGCTGACTCTGCCAAGAATGACGCGGAAGCTGTTCAAAACCTCAATGAAAGACATGAAGGTGACAAATCTGAAGAGGCAGAAGCTGCTCAGAATCTTGATCAAAAGCTGCCCCAAAAGTCAAACACTCTTGAAGGCGGTGTCAATGCAACCGAGGTGTATGATCACATTGAAACCAAAAATGTGGATAGCACAAAAGAGAAGAACGGTGAACCTATCCTCAAGACTAATACCGAATGA 1206 0.4362 MDKSKLALFGEKLKTNSANLSRIVSGKMKEILQTPTPESKMVDEATSETLEEPNWGMNLRICGLINSDEFNGSEVVKAIKRRINQKSPVVQKHCLDLLETCAMNCDKVFSVIASEKVLEDMVRLIDNPQVEQSNRTRALQLIRAWGESEDIAYLPVFSQTYLSLKGRGESLDTAGGNSPPIPYATESHTYQQSLNPPERYPVPEAGLRALALDDSEAFFTDHQPVSVEEKKEHLVVARNSLEVLSSILNSEAEPKPLKEELTLSLLDKCKQSLYVIKEIVQSTTNDEETLFEALYLNDELQQLVSKYEELEASQSLGEQQTQNADSAKNDAEAVQNLNERHEGDKSEEAEAAQNLDQKLPQKSNTLEGGVNATEVYDHIETKNVDSTKEKNGEPILKTNTE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03852 401 Pfam GAT domain 238 311 IPR004152 GO:0035091|GO:0043130
Vivi6g03852 401 Gene3D - 28 180 IPR008942 -
Vivi6g03852 401 Gene3D - 218 315 IPR038425 -
Vivi6g03852 401 SUPERFAMILY GAT-like domain 194 311 - -
Vivi6g03852 401 MobiDBLite consensus disorder prediction 356 370 - -
Vivi6g03852 401 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Vivi6g03852 401 MobiDBLite consensus disorder prediction 336 352 - -
Vivi6g03852 401 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Vivi6g03852 401 MobiDBLite consensus disorder prediction 378 395 - -
Vivi6g03852 401 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Vivi6g03852 401 PANTHER TOM1-LIKE PROTEIN 1 1 366 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vivi6g03852 401 MobiDBLite consensus disorder prediction 336 401 - -
Vivi6g03852 401 CDD VHS 39 165 - -
Vivi6g03852 401 Coils Coil 324 358 - -
Vivi6g03852 401 Coils Coil 293 313 - -
Vivi6g03852 401 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Vivi6g03852 401 ProSiteProfiles GAT domain profile. 187 312 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03852 Vivi-Chr6 134198715 134203038 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03852 - - mtr:25499268 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03852 6 134198715 134203038 Vivi6g03852 6 134198715 134203038 ECH