Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03805 ATGGTGGGTGTTATTTCGTTGATAACAGGTATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCTGAGAAGGTTACTGAAGGAATTGATGCTAGCAACCTTACTGCTATTATAACAGGAGGAGCAAGTGGTATTGGGTTGGAGACAACAAGAGTGTTGGCTCTTAGGAATGTGCATGTCATCATTGCAGCAAGAAGCATGGAATCTGCAGAGAAAGCCAAGCAACAAATATTACAAGAGAACAAGTTTGCACGAGTGGATGTAATGAAACTTGACTTGTGTTCAACAAAATCTGTCAGATTATTTGTGGAGAGTTTCCTTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGGATCATGTTTTGTCCCTTCAAGCTTTCAGAAGAAGGGATTGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTTCTATTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAACAAGTGGAATAGAGGGAAGGATCATAAATCTATCGTCAATTGCTCATAGATACCCTTACTGCAGAAAGGGGATTAGATTTGACAAGATCAATGATAAAAATGGTTATTCGAGTAAAAAGGCCTATGGACAATCCAAGTTAGCCAACATATTACATGCAAATGAACTATCCCGTCGTCTTCAGGAAGAGGGTGTGAATATTACAGCCAACTCTGTTCATCCAGGAGTAATAATGACTCCTCTTATGAGATATTCTTCTTACCTTATGAAATTCTTGAAGATCTTCAGCTTCTACATATGGAAAAACGTCCCACAGGGAGCAGCTACAACATGCTATGTTGCACTTCACCCAAACGTGAAAGGTGTGACTGGGAAATACTTTGTGGATTGCAATGAATTCAAGCCAAGTTCATTTGCTAAAAATAAACAGTTAGCAAAGAAACTTTGGGATTTTAGTGACAAGTTGATCAACTCAATCTCGAAAGCTTGA 975 0.3897 MVGVISLITGMAGPSGFGSASTAEKVTEGIDASNLTAIITGGASGIGLETTRVLALRNVHVIIAARSMESAEKAKQQILQENKFARVDVMKLDLCSTKSVRLFVESFLALDLPLNILINNAGIMFCPFKLSEEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTSGIEGRIINLSSIAHRYPYCRKGIRFDKINDKNGYSSKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSYLMKFLKIFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNEFKPSSFAKNKQLAKKLWDFSDKLINSISKA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03805 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Vivi6g03805 324 Coils Coil 68 88 - -
Vivi6g03805 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Vivi6g03805 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vivi6g03805 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vivi6g03805 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Vivi6g03805 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vivi6g03805 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Vivi6g03805 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Vivi6g03805 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vivi6g03805 324 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vivi6g03805 324 Gene3D - 25 321 - -
Vivi6g03805 324 Pfam short chain dehydrogenase 36 182 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03805 Vivi-Chr6 133468535 133472310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03805 35 246 Miscellaneous Gene Families AT2G29150 28.311 7.26e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03805 K11153 - gmx:100801849 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03805 6 133468535 133472310 Vivi6g03805 6 133468535 133472310 ECH