Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03753 ATGACGGGAATTCCTCGGAATCGTGATCATGCCTCTAATTCTAAACGAAGCAATGTCTTTAATTTGGTTGCACGGAGAGAGATTTCACCAAGAACAAAACATGCAGCAAGAGATGCAAGGCGTGGCCTCTTGTCATGGGTTGAGGCTGATTCATTGCGACATTTGTCAGCCAAGTATTGCCCTTTATTACCCGCCCCAAGGTCTACTATTGCAGCAGCGTTTAGTCCAGATGGAAAAGTTATTGCATCCACGCATGGTGACCACACGGTAAAGATAATCGATTGTGAAACTGGACGTTGCTTAAAGGTGTTAATGGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCAGAGTGCATAACATCTCACCATTTCTATCGCCCAATTGCTTCAATTGCTTTTCATGCCAAAGGTGAAATTATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTATGACAAGAAAAGTGAAGCATCCTACTCACCAATTTTTGTGCTGAAGACTAGGCGATCTCTACGAGCTGTGCATTTTCACCCTCATGCTGCACCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCGATGACAGAGGCAACATCTATTGGTTATTTACAATATCCTCCACCTGCCGTTTTTGTCACAAATATTCAACCCACGGAAAATGTTGCTTTGTCCAGTGAACCGCCTAACGTTTCATCGACTTTCTTCTTCGTTCCTTCATTTTCTGTCGATGAGTCAAGAGAGGAATTACAGCATGCTAGTCATGACGATGGCTCGAGTAGAATGCAAATTGAGTCCCCTGCGGTGGTTCAGTTTCAAGCAGATACAAATGCAACAGAACAATGTGATACTTCGTCTCCCATGGATACAGTCTCCGAGATTCCAAGTAACTCTCAACTTGGTACAGAATATCCCACCCATTCTTCTTTCTCTAATGGAATGGGAATTGGTATCCGCAACCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCGTCGGAAGGAAGTCAACACGGAAATGTTACTGATGTAAGTTCTCTCAATGGCATGTTACACGGACTATCGGGACAGACTGCAAATCATGGGGTTCATTCAGAGTTTGGTCAATTTCATCACTTTGTTTCTTCAAGAGACACAAGTGGTTGGGAATTACCTTTTCTACAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTATCCCCTCAACGCATTCTCACCCGGGTGTTAGTCATGGCACTCTAGCTCAACAGATTAGTTCTGCTGCAACGGCTAATACTCTTTCCACTTCTAATGTTGACACAGCAATGCCATCTACAGCAATGTCTGGCGGCATCAACATACCCAGATCTTCTACAAGATCAGGTCTACGGAGTCATTTTTCCCAATTGCGTAGACCTGTATCTGAATCCCGAAATGTTGCAGCTTCTACTAATACCCCACGCGACGGATCTGATATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACATCTGTGGCTGCAGCGGCAGCTACTGAATTGCCTTGTACTGTGAAGTTAAGGGTATGGTCTCATGACATAAAAAATCCCTGTTCCCCACTAAATTCTGACAGATGTCGTCTAATCATACCTCACGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCACATATAGAAGCTGATCCAGGATTGCAAACTCCGGTACATCAAGAGCCTGGTGTTGCAACATCCCCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGATTGGTGCTTGCTTCTCGAGCTATTAGAGCAGCTCACTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATACACAGTGTTAGAGGTGTATAGAGTTTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCTGAAGATGAGGTTAATGTGGCATGCTTTCATCCTTTTCCTGGGGGCGGCCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCAACTACGATGGTGCTCACCCAGTAAGTGACAATGGACCGAGTTACTTTCCCGAGGAAACCGTCGTTGGATTCAGTCAGTGA 2319 0.4476 MTGIPRNRDHASNSKRSNVFNLVARREISPRTKHAARDARRGLLSWVEADSLRHLSAKYCPLLPAPRSTIAAAFSPDGKVIASTHGDHTVKIIDCETGRCLKVLMGHMRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKSEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNIQPTENVALSSEPPNVSSTFFFVPSFSVDESREELQHASHDDGSSRMQIESPAVVQFQADTNATEQCDTSSPMDTVSEIPSNSQLGTEYPTHSSFSNGMGIGIRNLTMDGMETDETRPSEGSQHGNVTDVSSLNGMLHGLSGQTANHGVHSEFGQFHHFVSSRDTSGWELPFLQGWLMGQSQVGIPSTHSHPGVSHGTLAQQISSAATANTLSTSNVDTAMPSTAMSGGINIPRSSTRSGLRSHFSQLRRPVSESRNVAASTNTPRDGSDIQTIMSRIQSELATSVAAAAATELPCTVKLRVWSHDIKNPCSPLNSDRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILNYDGAHPVSDNGPSYFPEETVVGFSQ 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03753 772 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 142 - -
Vivi6g03753 772 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 146 IPR001680 GO:0005515
Vivi6g03753 772 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 63 749 IPR011047 -
Vivi6g03753 772 SMART WD40_4 97 137 IPR001680 GO:0005515
Vivi6g03753 772 SMART WD40_4 56 94 IPR001680 GO:0005515
Vivi6g03753 772 SMART WD40_4 140 177 IPR001680 GO:0005515
Vivi6g03753 772 SMART WD40_4 707 747 IPR001680 GO:0005515
Vivi6g03753 772 MobiDBLite consensus disorder prediction 463 515 - -
Vivi6g03753 772 Gene3D - 43 227 IPR015943 GO:0005515
Vivi6g03753 772 Pfam WD domain, G-beta repeat 98 137 IPR001680 GO:0005515
Vivi6g03753 772 Pfam WD domain, G-beta repeat 71 94 IPR001680 GO:0005515
Vivi6g03753 772 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 14 767 - -
Vivi6g03753 772 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Vivi6g03753 772 FunFam Activating molecule in BECN1-regulated autophagy protein 51 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03753 Vivi-Chr6 132547830 132554139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03753 71 239 Miscellaneous Gene Families AT5G08390 24.176 8.70e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03753 K17985 - gmx:100817857 1248.8