Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03740 ATGGAGGAGGACGGTGAGATATACGACGGTGCAAGGGCTGAATTCCCGCTTTCCTTCGGAAAACAATCCAAATCTCAAACTCCTCTCGAAACCATTCACAACGCCACTCGTCGTTCCGTTCCCAATTCCAAAACCGCCAACGATTTTCCTTCCATCTCTTCCTCTTCCAAACAATGGCTTCAATCCGTTCGTTCTTCCAAAAACCCTACCCTTCCTCCTCCGCCACCTTCTCCTCCCCTTCACGACGATTCTCCACTCGTCGGACCCCCTCCACCGCCACCACATAATGACGACGAGGAGGAGGATGAAGGTGACATGATTGGCCCGCCTCCACCGCCACCTGGTTCTAATCTGGACGATTCCGACTCCGACGAGGAATCTCATCAAGACCTTCTCGGAAACCGGTTTCGTATTCCGCTTAGCAACGAGATTGTACTCAAAGGCCATACAAAGGTTGTATCAGCTCTTGCTGTGGATCACTCTGGATCCAGGGTACTATCTGGAAGCTATGATTACATGGTTCGTATGTATGACTTTCAAGGAATGAGTTCCCGTTTGCAATCGTTTCGACAACTCGAGCCGTCTGAAGGGCATCAAATTCGCAATTTAAGCTGGAGTCCAACTGCAGACCGTTTTCTGTGTGTCACCGGTTCGGCTCAAGCTAAGATTTATGATCGTGACGGCCTCACTTTGGGCGAGTTTATAAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGTCATATAACTGGGTTGACATGTGGAGAGTGGCACCCAAAAAATAAGGAGACTATTTTAACATCATCAGAGGATGGGTCGCTACGCATATGGGATGTGAATGACTTCACAAGTCAGAAGCAGGTCATTAAGCCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGCGCATGGGATCATGATGGTAAATGCATCGGTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAACCTGGATGGGGAAGTAGGCCGGATATTTATATTGAAAAATGTCACGAGGATGATATTACTGGTCTGAAATTTTCTACTGATGGGAGAATCTTATTGTCAAGGAGCTCTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAAGCATTGAAGGTATTTAAAGAACTGCCAAATCACTACGGACAAACAAATGTTGGCTTCAGTCCTGATGAGCAACTATTTTTTACTGGAACATCTTTAGAAAGGGATAGCTCAACAGGAGGTTTATTATGCTTCTTTGATAGAGTAAATCTTGAACTTGTTTCAAAAGTTGGCATATCCCCCACTTCCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTCGCAACTGTTGGCGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCTCGTGCACCAAGGAAAAAATCAATTGACGACTTTGAGGCAAATCCTGTTATTCACAATCCTCATGCTTTACCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTGAAGTCACATAAGCCTGAACTCCCCATGACAGGACCTGGCTTTGGTGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGTTTGATTAAGGAGACATGGATGGATGAAGATCCAAGGGAAGCTATCCTAAAATATGCTGATGTTGCAGCAAAGGAACCAAAGTTCATTGCTCCAGCGTATGCCGAAACTCAACCTGAGCCATTGTTTGCGAAGTCAGATTCTGAGGATGAAGAGAAATGA 1854 0.4525 MEEDGEIYDGARAEFPLSFGKQSKSQTPLETIHNATRRSVPNSKTANDFPSISSSSKQWLQSVRSSKNPTLPPPPPSPPLHDDSPLVGPPPPPPHNDDEEEDEGDMIGPPPPPPGSNLDDSDSDEESHQDLLGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYMVRMYDFQGMSSRLQSFRQLEPSEGHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFIKGDMYIRDLKNTKGHITGLTCGEWHPKNKETILTSSEDGSLRIWDVNDFTSQKQVIKPKLARPGRVPVTTCAWDHDGKCIGGGIGDGSIQIWSIKPGWGSRPDIYIEKCHEDDITGLKFSTDGRILLSRSSDDSLKVWDLRKTKEALKVFKELPNHYGQTNVGFSPDEQLFFTGTSLERDSSTGGLLCFFDRVNLELVSKVGISPTSSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTISERGALVCVARAPRKKSIDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGLIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03740 617 Gene3D - 237 475 IPR015943 GO:0005515
Vivi6g03740 617 MobiDBLite consensus disorder prediction 515 543 - -
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Vivi6g03740 617 FunFam Nucleotide binding protein 89 234 - -
Vivi6g03740 617 FunFam WD repeat-containing protein 70 235 477 - -
Vivi6g03740 617 MobiDBLite consensus disorder prediction 515 534 - -
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Vivi6g03740 617 MobiDBLite consensus disorder prediction 68 93 - -
Vivi6g03740 617 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Vivi6g03740 617 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Vivi6g03740 617 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 289 IPR001680 GO:0005515
Vivi6g03740 617 Gene3D - 139 236 IPR015943 GO:0005515
Vivi6g03740 617 SMART WD40_4 237 280 IPR001680 GO:0005515
Vivi6g03740 617 SMART WD40_4 335 374 IPR001680 GO:0005515
Vivi6g03740 617 SMART WD40_4 429 473 IPR001680 GO:0005515
Vivi6g03740 617 SMART WD40_4 185 225 IPR001680 GO:0005515
Vivi6g03740 617 SMART WD40_4 139 178 IPR001680 GO:0005515
Vivi6g03740 617 SMART WD40_4 284 328 IPR001680 GO:0005515
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Vivi6g03740 617 SUPERFAMILY WD40 repeat-like 136 462 IPR036322 GO:0005515
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 180 - -
Vivi6g03740 617 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 616 - -
Vivi6g03740 617 MobiDBLite consensus disorder prediction 1 129 - -
Vivi6g03740 617 MobiDBLite consensus disorder prediction 19 67 - -
Vivi6g03740 617 MobiDBLite consensus disorder prediction 598 617 - -
Vivi6g03740 617 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Vivi6g03740 617 Pfam WD domain, G-beta repeat 144 178 IPR001680 GO:0005515
Vivi6g03740 617 Pfam WD domain, G-beta repeat 245 280 IPR001680 GO:0005515
Vivi6g03740 617 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Vivi6g03740 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 282 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03740 267 447 Miscellaneous Gene Families AT5G08390 25.275 3.46e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03740 K24752 - gmx:100815380 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03740 6 132466776 132470701 Vivi6g03740 6 132466776 132470701 ECH