Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03731 ATGGAACAACAACAACAAGAAAGAAGTGGTTCGAATTTGAAGCCAATGGACGCTGAGCAATTGAGAGAGCAAGCTCACAAAATGGTTGACTTCATTGCTGATTACTACAAAACCATCGAAAATCTCCCAGTTCTCAGCCAAGTTCAGCCAGGTTATCTTGGAAAGCTTCTACCAGATTCTGCTCCTACATGCCCTGAATCATTGCAACATGTTTTGAATGATGTACAGGAGAAGATACTACCAGGGGTCACACATTGGCAAAGCCCTAATTATTTTGCGTATTTTCCTTCCAATAGTAGTATTGCTGGTTTTTTAGGAGAGATGCTTAGTGCTGGTCTCAACATTGTGGGGTTTAGCTGGATAAGTTCTCCTGCTGCAACTGAACTCGAGACCATTGTTCTCGACTGGCTCGCCAAGGCTCTCCTTCTGCCTCATGATTTCTTTTCAAGTGGGCAAGGGGGTGGAGTTATACAAGGAACAGCAAGTGAAGCTGTGCTAGTTGTATTGTTGGCTGCCCGTGACAAGATCCTTCGGACAGTTGGAAGGAGTGCCCTTCCTAAGCTTGTAACATATGCATCTGACCAAACACACTCCGCTTTACAAAAAGCCTGCCAGATAGGAGGAATTGATCCAGAGCTTTGTAGGTTGCTTAAAACTGATTCTTCCACAAACTTTGCGCTTTCCCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCCAGTGGTCTTATACCCTTTTTCTTATGTGCTAACGTTGGTACTACTTCATCAACAGCTGTTGATCCTCTACCTGCATTGGCGAAAGTCACTAGGCCCAACAACATTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTATATGTCCAGAATACCGCCACTTCATTGATGGGGTTGAAGAAGCTGATTCATTTAACATGAATGCACATAAATGGTTCCTTACTAACTTTGATTGTTCCCTACTTTGGGTTAAGGAGAGGAGTGCTCTGATTCAGTCGCTGTCTACAAATCCCGAATTTCTGAAAAATAAGGCCTCTGAAGGTAACATGGTTATAGATTACAAAGACTGGCAAATTCCTCTTGGGCGTCGCTTTAGATCATTAAAACTTTGGATGGTGTTGCGACTCTATGGATTGGAAGGCCTGCAAACTCACATAAGAAGCCATATTGCAATGGCAGCTTATTTTGAGGAGCTTGTTGTTCAAGACTCCAGATTCAAGGTCGTTGCGCCTCGAACATTCTCTTTAGTCTGTTTTCGGCTTTTGCCTCCCCCGAACTCTGAAGATAATGGCAATAAACTGAACCATGATCTACTCGACTTAGTAAACTCAACAGGAAGTGTTTTCATAACACACACGGCTCTATCAGGTGAGTATGTTCTACGTTTTGCAGTAGGAGCGCCGTTGACAGAAATGAGGCATGTCAAAGCTGCGTGGCAGATTTTGCAAGAAAAAGCTACTGCTCTATTAGAGAGTTTATAG 1488 0.4321 MEQQQQERSGSNLKPMDAEQLREQAHKMVDFIADYYKTIENLPVLSQVQPGYLGKLLPDSAPTCPESLQHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWISSPAATELETIVLDWLAKALLLPHDFFSSGQGGGVIQGTASEAVLVVLLAARDKILRTVGRSALPKLVTYASDQTHSALQKACQIGGIDPELCRLLKTDSSTNFALSPDVLSEAISNDIASGLIPFFLCANVGTTSSTAVDPLPALAKVTRPNNIWFHVDAAYAGSACICPEYRHFIDGVEEADSFNMNAHKWFLTNFDCSLLWVKERSALIQSLSTNPEFLKNKASEGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLQTHIRSHIAMAAYFEELVVQDSRFKVVAPRTFSLVCFRLLPPPNSEDNGNKLNHDLLDLVNSTGSVFITHTALSGEYVLRFAVGAPLTEMRHVKAAWQILQEKATALLESL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03731 495 SUPERFAMILY PLP-dependent transferases 16 489 IPR015424 -
Vivi6g03731 495 CDD DOPA_deC_like 91 486 - -
Vivi6g03731 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 50 423 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vivi6g03731 495 FunFam Histidine decarboxylase 16 96 - -
Vivi6g03731 495 FunFam Histidine decarboxylase 97 389 - -
Vivi6g03731 495 Gene3D - 11 96 - -
Vivi6g03731 495 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 7 494 - -
Vivi6g03731 495 Gene3D - 97 389 IPR015421 GO:0003824
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 21 40 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 62 81 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 44 61 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 153 173 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 88 107 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 405 424 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 128 147 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 362 377 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 PRINTS Aromatic-L-amino-acid decarboxylase signature 109 127 IPR010977 GO:0006520|GO:0016831
Vivi6g03731 495 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 306 327 IPR021115 GO:0016831
Vivi6g03731 495 Gene3D Aspartate Aminotransferase, domain 1 390 495 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03731 Vivi-Chr6 132327818 132332410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03731 K01593 - gmx:100791074 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03731 6 132327818 132332410 Vivi6g03731 6 132327818 132332410 ECH