Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03677 ATGAAGTTCATTAACCCTAAAAGCCTCTCTCCCAAACGCCTTTTCCGTTCCAAGAAAGAAAAATCCTCCGTATCAAGATCCGACCCGCTTTCCTTCGGGTCAGCCTCTTCCTCTGATGATTCCACTCATAAAGCCGTCACCGGAGGCTCTCAAACACCTACCAGCGTCCTCCCCGAAGCGTCATCCAGCTCGTGGTCCGATGTCACCGTTGAAGTCCAATGGGAGCTCGCACAAGCCTTTCAGTTAATCGACCGCGACAACGACGGAGTCGTTTCGCGGCAAGAGCTTGAATCCGTTCTCACGCGCCTTGGTGCTCGGCCGCCGAGCTCTGAGGAAATCGAGATGATGATAAGCGAAGTTGATAGCGATGGTAGAGGATGCATAAGCGTGGAATCGATCATGAACCGGATTGGATCCGGTTCGGTTAGCTCGAACCCGAACCCGGAGGAGGAACTGAGGGAAGCGTTTGAGGTGTTTGATACGGATCGGGATGGGAGAATCTCGGCGGAGGAGTTGTTGAGGGTTTTTAGAGCGATTGGGGATGAACGGTGCACGTTAGAGGAGTGCAGGCGTATGATAGCGGGGGTTGATAAAAACAGAGACGGGTTTGTCTGTTTCGAGGAGTTTTCGTGTATGATGGAGATGCAGCGGTGA 654 0.5275 MKFINPKSLSPKRLFRSKKEKSSVSRSDPLSFGSASSSDDSTHKAVTGGSQTPTSVLPEASSSSWSDVTVEVQWELAQAFQLIDRDNDGVVSRQELESVLTRLGARPPSSEEIEMMISEVDSDGRGCISVESIMNRIGSGSVSSNPNPEEELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIAGVDKNRDGFVCFEEFSCMMEMQR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03677 217 ProSiteProfiles EF-hand calcium-binding domain profile. 75 106 IPR002048 GO:0005509
Vivi6g03677 217 Pfam EF-hand domain pair 149 213 IPR002048 GO:0005509
Vivi6g03677 217 Pfam EF-hand domain pair 76 131 IPR002048 GO:0005509
Vivi6g03677 217 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Vivi6g03677 217 ProSiteProfiles EF-hand calcium-binding domain profile. 184 217 IPR002048 GO:0005509
Vivi6g03677 217 FunFam Calmodulin, putative 70 142 - -
Vivi6g03677 217 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 151 215 - -
Vivi6g03677 217 ProSitePatterns EF-hand calcium-binding domain. 197 209 IPR018247 -
Vivi6g03677 217 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Vivi6g03677 217 SUPERFAMILY EF-hand 65 213 IPR011992 -
Vivi6g03677 217 Gene3D - 68 139 - -
Vivi6g03677 217 MobiDBLite consensus disorder prediction 26 62 - -
Vivi6g03677 217 CDD EFh 151 213 IPR002048 GO:0005509
Vivi6g03677 217 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Vivi6g03677 217 FunFam calmodulin-like protein 3 145 217 - -
Vivi6g03677 217 CDD EFh 75 131 IPR002048 GO:0005509
Vivi6g03677 217 SMART efh_1 112 140 IPR002048 GO:0005509
Vivi6g03677 217 SMART efh_1 188 216 IPR002048 GO:0005509
Vivi6g03677 217 SMART efh_1 75 103 IPR002048 GO:0005509
Vivi6g03677 217 SMART efh_1 151 179 IPR002048 GO:0005509
Vivi6g03677 217 MobiDBLite consensus disorder prediction 1 62 - -
Vivi6g03677 217 Gene3D - 140 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03677 Vivi-Chr6 131297534 131298655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03677 9 217 EF-hand Containing Proteins AT3G10190 52.093 1.23e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03677 K13448 - qsa:O6P43_006439 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03677 6 131297534 131298655 Vivi6g03677 6 131297534 131298655 ECH