Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03659 ATGGCAGAACAAAACGGAGTACACAACCTCTCTCTTCAAACCACAACCCCTATGGAGACTGACAACGGAGACACACCACAACTCCAACCTCAAGAACAAGAACAACCCAAGTGTTTAATCACCAAGACCGACAATGGAAGCATAGAGAGTCATCGTTACTACCTCTCTCGCAGAACAACACTCGAGATGCTCAAAGACAGAGGCTACTCTATTCCCACTCCCGAAATCCAGCTCTCCCTTGAAGAATTTCGTCAAGTTCATGGTCAATCTCCTGATGTTGATCGACTCCGGTTTACGGCTAGTCATAGCACTGATCCCTCTAAAAGGATTTTGGTTATTTTTAGTGGGCCAGGGACTGTGAAACTGAATGTGGTTAGGAACATTGTTGGACAGATTGTGAATAGAGACACTCTCAGTGGTTTGATTTTGATTGTGCAAAATCAGATCACTAGCCAGGCTTTGAAAGCGGTTAATGTTCTATCTTTCAAAGTTGAAATTTTTCAGATCACAGACTTGCTTGTTAATATTACAAAGCACGTGTTGAAGCCAAAGCATCAGATTCTTACTGATAAGCAGAAAAGAAATCTCCTGAAGAAGTACGATATACAAGAAAAGCAGCTTCCCCGGATGCTACAGACAGATGCAATTGCTCGATATTATGGACTTCAGAGGGGGCAGGTAGTTAAAGTTACCTACACCGGTGAAATCACCCAGATGCATGTTACCTATCGATGCGTTTGGTGA 744 0.4301 MAEQNGVHNLSLQTTTPMETDNGDTPQLQPQEQEQPKCLITKTDNGSIESHRYYLSRRTTLEMLKDRGYSIPTPEIQLSLEEFRQVHGQSPDVDRLRFTASHSTDPSKRILVIFSGPGTVKLNVVRNIVGQIVNRDTLSGLILIVQNQITSQALKAVNVLSFKVEIFQITDLLVNITKHVLKPKHQILTDKQKRNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03659 247 Gene3D - 172 247 IPR035913 -
Vivi6g03659 247 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 47 175 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vivi6g03659 247 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 48 247 IPR014381 GO:0003899
Vivi6g03659 247 PIRSF RPB5 42 247 IPR014381 GO:0003899
Vivi6g03659 247 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 172 247 - -
Vivi6g03659 247 Pfam RNA polymerase Rpb5, C-terminal domain 174 246 IPR000783 GO:0003677|GO:0003899|GO:0006351
Vivi6g03659 247 MobiDBLite consensus disorder prediction 1 34 - -
Vivi6g03659 247 Gene3D - 45 171 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vivi6g03659 247 SUPERFAMILY RPB5-like RNA polymerase subunit 172 247 IPR035913 -
Vivi6g03659 247 Pfam RNA polymerase Rpb5, N-terminal domain 49 131 IPR005571 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03659 Vivi-Chr6 130853956 130857408 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03659 K03013 - gmx:100306033 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03659 6 130853956 130857408 Vivi6g03659 6 130853956 130857408 ECH