Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03654 ATGATAACTATGGATACTTTGGTCAAAACACCAAACAACCTTCAATTTTTGCAACCACTTCATGGCTATTCAGAAAAATTGGCTAATTGTTCAGGTTCATTTAAGTTACAAAGCCATGAAGTTAGATTTGGTTCCAAGAAAAAACCTATTTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTTAAGAAAGAGAATTTGGATTTTGAACTTCCTTTGTTTGATTCAACAAAGGGAACTGTTGTGGATCTTGCTGTTGTGGGAGGTGGTCCTGCGGGGCTCGCGGTAGCGCAGCAGGTTTCGGAAGCAGGGCTTTCGGTTTGTGCGATTGATCCGAATCCGAGATTGATTTGGCCGAATAATTATGGTGTTTGGGTGGATGAATTTGAAGCGATGGATTTACTTGATTGTCTTGATAAGACTTGGTCCGGTGCTGTTGTTTATATCGATGATAAAACTAAGAAGGATTTAGATAGGCCTTATGGTAGGGTGAATAGGAAGCTTTTGAAGTCGAAGATGCTTCAGAAGTGTATATCGAATGGTGTGAAGTTTCACCAAGCGAAAGTTATGAAGGTTGTTCATGAGGAAGCTAAATCGTTGCTGATTTGTAACGACGGTGTCACGGTTCAGGCTACTGTGGTTCTTGATGCTACTGGTTTTTCGAGATGCCTTGTGCAGTATGATAAACCGTATAATCCAGGTTACCAAGTTGCTTATGGTATTTTGGCTGAGGTTGAGGAACATCCCTTTGATGTTGATAAAATGCTTTTTATGGATTGGAGAGATTCGCATTTGGACAATAACATGGAGCTCAAGGAGAGAAATAGTAAAATACCTACCTTTCTATATGCAATGCCGTTTTCGTCCACCAAGATATTTCTCGAAGAAACGTCTCTTGTTGCGCGGCCTGGGTTAAGGATGGAAGATATACAGGAAAGAATGGTTGCTCGGTTGAAACACTTGGGTATCAATGTGAAAAGCATTGAAGAAGATGAACATTGTGTGATTCCCATGGGCGGCCCTCTCCCGGTTCTCCCTCAAAGAGTTGTTGGAATTGGTGGTACGGCCGGGATGGTGCATCCTTCAACTGGTTACATGGTAGCGAAGACGCTAGCTGCTGCTCCTATTGTTGCTAACGCTATTGTTCAGTATCTCGGTTCTGATCAAGGTCTTTTAGGAAATGAAATATCTGCGCAAGTATGGAAAGACTTATGGCCAATTCAAAAGAGACGACAGAGGGAGTTCTTCTGTTTCGGTATGGACATCTTGCTCAAGCTTGATTTACCTGGAACGAGGAGATTTTTTGATGCGTTTTTTAATCTGAAACCTCATTATTGGCATGGATTCTTATCGTCAAGATTGTATCTTCCTGAGCTGTTTCTTTTTGGACTGTCTCTATTTTCTTATGCTTCAAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAATATGGTGAACAACTTGATAAAAGATAAAGAATAA 1506 0.411 MITMDTLVKTPNNLQFLQPLHGYSEKLANCSGSFKLQSHEVRFGSKKKPILRASSSALLELVPEFKKENLDFELPLFDSTKGTVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDKTWSGAVVYIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVMKVVHEEAKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDNNMELKERNSKIPTFLYAMPFSSTKIFLEETSLVARPGLRMEDIQERMVARLKHLGINVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVAKTLAAAPIVANAIVQYLGSDQGLLGNEISAQVWKDLWPIQKRRQREFFCFGMDILLKLDLPGTRRFFDAFFNLKPHYWHGFLSSRLYLPELFLFGLSLFSYASNTSRVEIMAKGTLPLVNMVNNLIKDKE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03654 501 NCBIfam lycopene cyclase family protein 86 481 IPR010108 GO:0016117|GO:0016705
Vivi6g03654 501 PANTHER - 47 496 - -
Vivi6g03654 501 FunFam lycopene epsilon cyclase, chloroplastic 82 420 - -
Vivi6g03654 501 SUPERFAMILY FAD/NAD(P)-binding domain 84 467 IPR036188 -
Vivi6g03654 501 Pfam Lycopene cyclase protein 86 478 - -
Vivi6g03654 501 Gene3D - 83 430 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03654 Vivi-Chr6 130796456 130798388 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03654 K06443 - gmx:100783830 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03654 6 130796456 130798388 Vivi6g03654 6 130796456 130798388 ECH