Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03606 ATGACAGAGGTGTCGATGTGTTGCAGCAGCAGTTGCGAGCTGAGTCCAGATGAAGAGAGGATCATTATCAGAGACATTGCACTTTCTGTTCAAACTAATATCAAAGAAGGCGACACCTTCTTCATCATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACCCTTCTTATGATGGATCTTCCTTTCATGAACATAGCGATTTGGCTAGTTTAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAACTATGATTTGATAGATAATACTGGATCAGAGGACTCTACTACAAGTATTCAAATTCACGATACACTCTTAGAAGGGCGTGACTATGTGTTACTTCCCCAAGTGGTTTGGGACCAATTATTTAAATGGTATGGTGGCGGACCATCATTAGCGAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTTGCAGTAGAGGTGTATCCTTTACGCCTTCAATTACTCGTGTTGCCAAAAAATGTTCGCTCCACTATAAGAATCAGCAAGAAGGAAACTATTGGACAGCTACACAAAAATGCTTGTGAAATATTCGATCTTCAGTTGGACCAGGTGCGCATCTGGGATTACTATGGCCATCGGAAGCACGCCTTGATGAATGACATGGATAAGACTCTGGATGATGTCAATCTACAAATGGACCAAGATATTCTTGTTGAGGTCGTAAACAATACAAATAGCACAAGCTCTGCTCAAGAAAATGGATCAGCACAGAGGGAAGCAAATTCTGTTCTTGTGGAGCCTTCAAAATCAAACTTATCAGCTGCCGGTGCCCTGTCTACTAGTAAGGGTGGATCTAAAGGCAACAATATCGAACATTCTTCATCTCAGAAACTAAATTCTCCGGACAGAGATTCAGAAAACCCTTATGGAACTCTTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTCACTGGGTTGCTAAATCTTGGCAATACTTGTTTCATGAACAGTGCTATACAGTGCCTTGTTCATACGCCAGAATTTGCTAGATACTTTAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTCGGCATGGTTGGTGAGCTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGCGAACACCGATTGCTCCTCGGCCTTTTAAATCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAACCAACATGATTCTCAGGAGCTCTTAGCATTTTTACTTGATGGTCTCCATGAAGACTTAAATCGTGTTAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGCCGACCGGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGTCAGGGACAATACAAGTCGACTTTAGTTTGTCCAGTTTGCAACAAAGTCTCCGTCACATTTGATCCTTTCATGTACCTTTCCCTGCCTCTCCAGTCCGCCACCAATAGGACCATGACAGTGACAGTTTTTAGTTGTGATGGTTCTACCTTGCCATCTCCGTGTACAGTAACAGTGCCCAAGCAGGGACGGTGCAGAGATCTTATACAAGGGCTTAGCAATGCATGCTCATTGAAGCATAACGAGAGGATGGTGCTTGTGGAGATACGAAACCATTTGATCCATAGATTTTTTGAAGATCCTCTTCAATTGTTGTCCTCAATTAAAGATGATGACCGTCTTTCCGCTTACAAGATTCCAAAGATGGACAAAAACACAAAGTACCTCCAGTTGATACATCGCCGCAGAGAGCAGAGCAGTGACTCACATACCGTTTCAGGATGGAAACCATATGGAACACCTATTGTTTCGTTGATCTCATGCGATGATACAATCACCAGAGGTGACATACAAGTAATAGTGAATGGTATACTCTCTCCACTTTTGAAATCTGCTTCTGCTGAAACCAACACCGTGTTGAATTCAACAAATAAGGATGATACCGGTTCAAAAGCAACACACCTACCAACGTTACCTTTACTACTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGGGGAGAAAGTAGTTAAACTGTCACCGTCATCAGCAAGAGTGTTGGTTTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCACTCGAGACTTTGCCTGAAGTTTTGAAATATGGGCCTGTAACCAAGAAAGCTCGTTCTGAACCTCTTTCATTGTACACTTGTTTGGAAGCTTTTCTGCGTGAAGAACCTTTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGGCAGGCAAGTAAAAAGCTTGACTTATGGAGGCTCCCAGAGGTTTTGGTAATTCATTTAAAGAGGTTCTCATACAGTAGGTCAATGAAGCATAAACTCGAGACTTTCGTTAACTTTCCTATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCGCGGCGTCAAGTATATGAACTCTACGCCCTTACCAATCATTACGGTAGTATGGGTAGTGGACATTATACTGCACATATTAAGCTTTTAGACGAAAACAGGTGGTACAATTTTGACGATAGCCACATATCGCTCATAAGTGAAGACGAGGTTAATACTGCAGCCGCATATGTTCTGTTCTACCGGAGGGTAAAAACTGACGATGATGATATTGTAAGCAATGGAGCTTAG 2730 0.4205 MTEVSMCCSSSCELSPDEERIIIRDIALSVQTNIKEGDTFFIITQRWWQHWIEYVNQDQTNPSYDGSSFHEHSDLASLSALKRPAGIDNYDLIDNTGSEDSTTSIQIHDTLLEGRDYVLLPQVVWDQLFKWYGGGPSLARKVISSGLSQTEFAVEVYPLRLQLLVLPKNVRSTIRISKKETIGQLHKNACEIFDLQLDQVRIWDYYGHRKHALMNDMDKTLDDVNLQMDQDILVEVVNNTNSTSSAQENGSAQREANSVLVEPSKSNLSAAGALSTSKGGSKGNNIEHSSSQKLNSPDRDSENPYGTLGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKSKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSATNRTMTVTVFSCDGSTLPSPCTVTVPKQGRCRDLIQGLSNACSLKHNERMVLVEIRNHLIHRFFEDPLQLLSSIKDDDRLSAYKIPKMDKNTKYLQLIHRRREQSSDSHTVSGWKPYGTPIVSLISCDDTITRGDIQVIVNGILSPLLKSASAETNTVLNSTNKDDTGSKATHLPTLPLLLVDDNNACIDLSMGGEKVVKLSPSSARVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARSEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQVYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDDDIVSNGA 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03606 909 Gene3D Cysteine proteinases 311 536 - -
Vivi6g03606 909 SUPERFAMILY Cysteine proteinases 318 897 IPR038765 -
Vivi6g03606 909 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Vivi6g03606 909 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Vivi6g03606 909 SMART dusp 33 146 IPR006615 GO:0004843
Vivi6g03606 909 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 897 IPR028889 -
Vivi6g03606 909 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 839 856 IPR018200 GO:0004843|GO:0006511
Vivi6g03606 909 Gene3D - 7 156 IPR035927 -
Vivi6g03606 909 CDD Peptidase_C19R 739 895 - -
Vivi6g03606 909 Gene3D - 157 245 - -
Vivi6g03606 909 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 225 896 - -
Vivi6g03606 909 MobiDBLite consensus disorder prediction 242 309 - -
Vivi6g03606 909 Gene3D Cysteine proteinases 716 904 - -
Vivi6g03606 909 Pfam Ubiquitin carboxyl-terminal hydrolase 320 894 IPR001394 GO:0004843|GO:0016579
Vivi6g03606 909 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Vivi6g03606 909 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03606 Vivi-Chr6 129708181 129716631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03606 687 898 Miscellaneous Gene Families AT2G24640 29.302 9.90e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03606 - - mtr:11408935 1680.23