Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03587 ATGGCCAAAGGCGTAATATCTGACGACGAAGATGAGGTTGAGATGGACGAGAGAGAGCCCGTTGATGGTGAAGAATTGGAAGAGGGAGGTCGAGATATGGACGAGGATGATGAGGATGAAGAAGAAGAGGAAGGGCAAGATGAATATGAAAAGGATGGATTTATAGTTGATGAAATTGAGGAAGAAGAGGAACAGGATGAAGAAGAAAGAGCAGACAGTGACGAAGAGCGTCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAACTGTTGGAGGACAACAATATCAATATTCATCGTCGGAAGGAAAGCAAAAAGTTCAAAAGATTAAAAAAGGGCCAGAGGGATGAGGAGGGGCAATCTGGACAATCTGACGAAGAAGAGTTTTATGGAAGTGGTAAGGTTGGGCGAACTGCTGAGGAGAAACTTAAACGCAGTTTATTTGGCGATGATGAAGGAACTCATCTTGAAGACATTGCCGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGATGCTGACATCGGGGAAGAAGATGAAATGGCCGACTTCATTGTAGATGAAGAAGAAGTTGATGAGAACGGAGCCCCTGTGAGGACTAAGAAGCCAAAGGGTGTAAGAAGGACTAGGCAGGCACCGGGAGTCTCGTCCTCAGCTTTACAAGAAGCTCAAGAATTATTCGGTGATGTCGATGAGTTGCTTTTAGCTCGCAGTCGTAGTCGAGGATCCGATGATTACAAAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTCTCTGAGAAATATATGACAGAGAATGATGACCGAATAAGGGAGTCCGATATTCCAGAGAGAATGCAGATATTAGAGGAGAGTACCGGTGCTCCTTCACTGGATGAAAATAGTATAGATGAAGAGAGTCAGTGGATAGCTACTCAAGTTATAAGTGGGGCAGTCCCTTGGATTCCAAAGTTAGTTTCAAAGTCAAATTCAAAGTTAGATTCAGACTCCAAAAATAATGGGAAGGATGAGGATCTACCAATTGACAAGGATGATATTGTCAGACCTAATAATGGGATGGATGAGGATCTACCAACTGACAAGGATGATACTGTCAGATTTAAGGATCGGAAGTATGAGGATCTACCAATTGACATGAATGATATTGTCAGATTTTTGAAACTGCATCATGTCCAAAAGTTAGATATTCCTTTTATTGCCATGTATCGGAAGGAGGAGTGTTTGAGCTTATTGAAAGACCTACCTGAAGCTGGAAATGATAATTGGGATAAGAATAACAAAACACCTACTCTAAAATGGCACAAGACACTTTGGGCTCTACAGGACCTGGACAGGAAGTGGCTGCTTCTTCAGAAGCGGAAGAATGCCCTTCAATTATACTACAACAAACGGTTTGAAGAAGAGTCTCGTCGTGTATACGATGAAACAAGACTAAACTTGAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAGGCAGAATCAGAGAGGGAGGTTGATGATGTTGACTCGAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAGTACAAAAGGCCAAAGCGGAAATCAATGTATAGCACTTTCAGTAAGGCAGGTCTGTGGGAAGTTGCAAGCAGGTTTGGGTCTAGCTCTGAGCAAATTGGATTATGTCTATCTGTAGTTCAGCTGCATGAGTTTGTAGATCCAAAGGAAACTCCAGAAGAGGTGGCTTCTAACTTCACATGTGCCATGTACGATACCCCCGAAGAAGTTCTTAAATGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCCAACATAAAGAAATATGTTCGTAACCACTTTATTGACCACGCCGTGGTGTCAACCTCCCCAACTCCCGATGGAAATACAACGATAGATTCGTTCCATCAGTTTTCTGGGGTGAAATGGCTGCGAGAGAAGCCTTTGAATAAATTTGAGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAAGACAAACTCATTCAAGTTACTATTAAGCTTCCTGAAGAACATCTTAATAAGTTAATAGACCAATTCAATGAGTATTACATCAGTGATAGTGTCAGCAGGTCTGCTCAACTGTGGAATGAACAGAGGAAGCTGATACTGCAGGATGCAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGTGTCTTAGCAAGCAAAGCAAAGCACTGGGTACTTACTGAGTATGGGAAGGCTTTGTGGAGTAAGGTTTCTGTGGGGCCTTATCAACAAAAGGAAAATGATCTTAGCTCGGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTCTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCGGGAGAAGTGCAAGATGTGCTATACACTGGGTCGCTTACTTTAAGGTCACAGAATGTCCATGACCAACAAAGGAAGAAGAATGACCAAGAACGCGTATTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGCTAACTTGTCTTGCACTCGTTTGAAAGAAGATATTTATGAGGTTATTTTTAAGATGGTTGAGGAAAATCCTAGAGATGTTGGGCATGAAATGGACGGGCTCAGCATTGTGTATGGTGATGAATCTCTGCCCCGTCTTTACGAAAATTCCCAAATTTCCTCTGAACAACTTCCTTCGCAGCAGCTAGGTATAGTGAGGCGGGCTGTTGCTCTTGGTCGATTTCTCCAGAACCCATTAGCAATGGTTGCAACATTATGTGGGCCCAAAAAGGAAATATTGTCATGGAAACTGACCCCTTGGGAGAGTTTTCTAAACCCGGATGATAAAATTGGGATAGTTGAGCAGGTTATGATAGATGTGACCAATCAGGTGGGCTTAGACATTAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCGTTACAGTTTATTTCGGGGCTTGGTCCGCGGAAGGCTGCATCCTTGCAGAGATCGCTAGTTAGAGCCGGCTCAATTTATACCAGAAAGGATTTTGTGACAGATCACCAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACACGAATTCATCCTGAATCATATGTTCTTGCTCAAGAGTTGGCCAAAGATGTCTATGACGAAGACGGCACGGGTGATGCAAATGATGACGATGATGCCTTAGAGATGGCCATAGAACATGTGAGAGATCGGCCTAGTTATTTGAAAAATCTGGCCGTGGAGCAATATGCTGAAGACAATGAACGTAAAGACAAAATTGAAACTTTATATGATATAAGAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAGGAGACTCTCGCTGAAGGTAAAATGGTCCAGGTTACAGTTCGCCGAGTTCAAGCCCAAAGGGCAATATGTGGGCTTGAATCTGGAATGACCGGAATCCTTATGAAAGAAGACTATGCAGATGACTTGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAAAATAGGTATCAAGTCTTCCTTGTTTGTAAAGAAAGTGAAATGAGAAGTGATCGATTACATCACAACCACAACTTTGATCCCTATTATCACGAAGACCGGAGTTCCTTGCCGAATGAGCAAGACAAAATTCGGAAAGAAAGGGAGCGTTCAAAAAAGAATTTCAAGCCTAGGATGATTGTTCATCCTAGATTTCAAAACATAACTACCGATGAAGCATACGAGTTCTTGTCAGACAAGGATCCTGGTGAAAGTATTTTTCGTCCTAATGATAAGGGTCCATCATATCTTACTTTGACTCTTAAAATTCATGATGGAGTATATGCCCACAAGGAGATAATTGAAGGCGGGAAGGAACTGAAGGACATCACAAGCTTACTTCGAATCGGAAAGACGCTTAAAATTGGAGAGGATACTTTCGAGGATTTAGATGAGGTTATGGACCGATATGTTGATCCCTTGGTTACTCATTTAAGAACAATGTTAAATTATCGCAAGTTCAGGACGGGTTTGAAAACAGAAGTTGACGAACTTTTGAAGACCGAAAAGGAAGAGAATCCAATGCGTATAGTTTATAGTTTTGGCATCTGTCATGAACATCCTGGCACATTTGTATTGACTTACATAAGAAGTACAAATCCACACCATGAGTACATTGGTCTTTACCCCAAGGGATTCAGGTTCCGCAAAAAGATGTTTGAGGATATTGACCGGCTTGTGGCATATTTTCAAAGGCACATTGATGATCCACAAAATGATTCAGCACCTTCCATTAGATCAGTAGCTGCAATGGTGCCAATGCGAAGCCCTGCTACTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTTCGAACAGCGAGGGTGGTTGGAGAGGAGGTCACTCGTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGAACAGGACGACCTGATTACAGAAATAATGGGAATCGAGATGAACACCCTAGTGGATTGCCGCGTCCATATGGTGGTGGACGAGGGCGTGGCCGTGGTTCTTATAACAATAGTAGTAGAGGACACAACAACAATGAAAGGCGTGCCGGTGCAACCAGATGGGGAGCTGCCGTGAAAGACGGGGATGACAGTTTAAGCAACTTCCCAGGGGCTAAGATTCAAAACTCCCCTGGAAGAGAAGCATTTCCGGGTGGTTGGGGTGGAAGTAGTGGTTGGGGAGGTGGAGCTAGTGGTGGTGACAAAAGTGGCTGGGGAGGTGGAGCCAGTGCTGGTGACAAAAATGGTTGGGGAGGTGGAGCTAGTGGTGGTGACAAAAGTGGCTGGGGAGGTGGAGCTAGTACTGATGACAAAAGTGGCTGGGGAGGTGGAGCTAGTGGTGGTGACAAAAGTGGCTGGGGAGGTGGAGCTAGTGGTGGTGACAAAAGTGGCTGGGGTGCTGGTACAAGCGATGCTGAACAGGGAAATTCCGGCTGGGGAACTGGATCCAAGAAAGCTGGCGACAATGGATGGTCTGGAAACTAA 5208 0.4364 MAKGVISDDEDEVEMDEREPVDGEELEEGGRDMDEDDEDEEEEEGQDEYEKDGFIVDEIEEEEEQDEEERADSDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDEEGQSGQSDEEEFYGSGKVGRTAEEKLKRSLFGDDEGTHLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEVDENGAPVRTKKPKGVRRTRQAPGVSSSALQEAQELFGDVDELLLARSRSRGSDDYKETRLEDEFEPIVLSEKYMTENDDRIRESDIPERMQILEESTGAPSLDENSIDEESQWIATQVISGAVPWIPKLVSKSNSKLDSDSKNNGKDEDLPIDKDDIVRPNNGMDEDLPTDKDDTVRFKDRKYEDLPIDMNDIVRFLKLHHVQKLDIPFIAMYRKEECLSLLKDLPEAGNDNWDKNNKTPTLKWHKTLWALQDLDRKWLLLQKRKNALQLYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGSSSEQIGLCLSVVQLHEFVDPKETPEEVASNFTCAMYDTPEEVLKCARHMAAVEISCEPNIKKYVRNHFIDHAVVSTSPTPDGNTTIDSFHQFSGVKWLREKPLNKFEDAQWLLIQKAEEDKLIQVTIKLPEEHLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILQDAIFRFLLPSMEKEARGVLASKAKHWVLTEYGKALWSKVSVGPYQQKENDLSSDDEAAPRVMACSWGPGKPQTTFVMLDSSGEVQDVLYTGSLTLRSQNVHDQQRKKNDQERVLKFMTDHQPHVVVLGAANLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSQISSEQLPSQQLGIVRRAVALGRFLQNPLAMVATLCGPKKEILSWKLTPWESFLNPDDKIGIVEQVMIDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGSIYTRKDFVTDHQLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYVLAQELAKDVYDEDGTGDANDDDDALEMAIEHVRDRPSYLKNLAVEQYAEDNERKDKIETLYDIRRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVRRVQAQRAICGLESGMTGILMKEDYADDLRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKESEMRSDRLHHNHNFDPYYHEDRSSLPNEQDKIRKERERSKKNFKPRMIVHPRFQNITTDEAYEFLSDKDPGESIFRPNDKGPSYLTLTLKIHDGVYAHKEIIEGGKELKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLRTMLNYRKFRTGLKTEVDELLKTEKEENPMRIVYSFGICHEHPGTFVLTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQNDSAPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSNSEGGWRGGHSYDRDRSSTPGSRTGRPDYRNNGNRDEHPSGLPRPYGGGRGRGRGSYNNSSRGHNNNERRAGATRWGAAVKDGDDSLSNFPGAKIQNSPGREAFPGGWGGSSGWGGGASGGDKSGWGGGASAGDKNGWGGGASGGDKSGWGGGASTDDKSGWGGGASGGDKSGWGGGASGGDKSGWGAGTSDAEQGNSGWGTGSKKAGDNGWSGN 1735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03587 1735 SUPERFAMILY Ribonuclease H-like 784 940 IPR012337 -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 532 795 - -
Vivi6g03587 1735 Gene3D - 384 540 IPR023319 -
Vivi6g03587 1735 SMART rnase_8s 784 902 IPR006641 GO:0006139
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 1505 1519 - -
Vivi6g03587 1735 Pfam Helix-hairpin-helix motif 944 1045 IPR032706 -
Vivi6g03587 1735 SUPERFAMILY RuvA domain 2-like 1059 1148 IPR010994 -
Vivi6g03587 1735 Gene3D SH2 domain 1393 1489 IPR036860 -
Vivi6g03587 1735 Gene3D - 541 978 IPR023323 -
Vivi6g03587 1735 Gene3D - 774 1165 IPR037027 GO:0006139
Vivi6g03587 1735 SMART S1_6 1171 1244 IPR022967 -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 1393 1486 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 163 198 - -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 774 945 - -
Vivi6g03587 1735 Pfam Acidic N-terminal SPT6 36 124 IPR028083 -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 72 92 - -
Vivi6g03587 1735 Pfam HHH domain 1060 1147 IPR041692 -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 9 71 - -
Vivi6g03587 1735 Pfam Holliday-junction resolvase-like of SPT6 783 940 IPR028231 -
Vivi6g03587 1735 Coils Coil 56 79 - -
Vivi6g03587 1735 CDD SH2_Nterm_SPT6_like 1295 1383 IPR035019 -
Vivi6g03587 1735 ProSiteProfiles S1 domain profile. 1173 1244 IPR003029 GO:0003676
Vivi6g03587 1735 SUPERFAMILY RuvA domain 2-like 956 1046 IPR010994 -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 368 529 - -
Vivi6g03587 1735 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 10 1548 IPR017072 GO:0032968
Vivi6g03587 1735 CDD SH2_Cterm_SPT6_like 1394 1480 IPR035018 -
Vivi6g03587 1735 Gene3D - 1166 1253 IPR012340 -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 954 1048 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 337 371 - -
Vivi6g03587 1735 SUPERFAMILY Tex N-terminal region-like 380 762 - -
Vivi6g03587 1735 Gene3D - 979 1048 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 138 162 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 331 371 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 1502 1735 - -
Vivi6g03587 1735 Pfam SH2 domain 1262 1479 IPR035420 -
Vivi6g03587 1735 Gene3D - 1054 1146 IPR042066 -
Vivi6g03587 1735 FunFam Transcription elongation factor Spt6 1052 1146 - -
Vivi6g03587 1735 SUPERFAMILY Nucleic acid-binding proteins 1168 1248 IPR012340 -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 1259 1283 - -
Vivi6g03587 1735 PIRSF Spt6 2 1550 IPR017072 GO:0032968
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 1710 1735 - -
Vivi6g03587 1735 Gene3D SH2 domain 1281 1392 IPR036860 -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 1166 1254 - -
Vivi6g03587 1735 FunFam Transcription elongation factor spt6 1281 1392 - -
Vivi6g03587 1735 MobiDBLite consensus disorder prediction 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03587 Vivi-Chr6 129231226 129240546 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03587 K11292 - gmx:100809136 2529.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03587 6 129231226 129240546 Vivi6g03587 6 129231226 129240546 ECH