Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03576 ATGGCTTCCTTCCCTCCTCCTGGTTCACTCACCCTCTGCGAACTCAACCGCGACCTAATCACCGTCGATGCACTCTCCGATGATAGAGCCGATCAAACCTACGGAAAGCATCTCGGATTGGTGTTCAGCCCCGTGCCGTTTCAGCCTCCGCCACCGCCTCTCGAGAACGACGTTCCCGAACAGGAAGCAACCGCCGTGGTAACCGTTTCTAGAAAAGGTCCTCTGGCAGTTCTGCAAGGCCTTGTAAACGAGTGTCTCAGACGCCTCGTTTACCCTAACGATGTGCATTTGTTGCCTGAGGTTAATCTTCAAGAAGTGAGTTGGCACCTTAATAGGCATATAATTGCTTTTATTTCCGGGCCTAACCAAGTGTTAGTTCATGATTATGAAGATCCAGATGGGAAGGATTCAACTATCTTGACCAACGAGTCTCAGAGAGATGTTAAAGTGCTAGAGTGGAGGCCGAATGGTGGGAGGATGCTGGCTGTGGGTTGCAAGAGTGGAATTTGCATATGGTCGGCTTCATATCCCGGAAATACAGCTTCTGCTAGATCTGGTACTATATCCTATGTAGGAAGTTTATCGAGAGGCTCTGGCATTCGGTATCTCCTGGTTGATTTTCTTCGGAGTCAAAATGGGGAACATGTTAGCGCCCTTACTTGGAGTCCGGATGGAAGATACTTAGCTTCTGCTTCATACGAGAGCTCTTCTTTCACTGTGTGGGATGTTGCTCAAGGTGTGGGGACACCTATTCGACGAGGATTAGGAGGCATATCAATGCTAAAGTGGTCACCCACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACTTGGACATCAGAACAATGGTCATCAACTAGTAGTGGTTTTGTCAAGTGTGCAACATGGGATCCAGATGGACGTATGGTACTGCTTGCATTTTCCAAATCATCAACTTTGGGATCTGTTCATTTCGCATCAAAGCCTCCCTCATTAGACACACATCTGTTACCTGTTGAGTTGCCAGAGATATTATCGTTGACAGGCAGTCAGGGAATTGAAAAAATAGAATGGGATAGTTCAGGAGAGAGATTGGCTGTGTCTTTTAAAGGCGGGGATGACGTATATGGGGGGCTAATCGCCATCTATGATACAAGAAGAACTCCTCTGATATCTACATCATTAATTGGATTTATAAGAGGACCCGGAGAAAATCCAAAGCCAATTTCATTTTCATTTCATGGGAAGTTTAAACAGGGGCCTTTGCTCTCTGTGTGTTGGAGCAGTGGATTCTGTTGCACTTACCCTCTCTTGTTCCGTTCTCATATGCTTACATAA 1344 0.4576 MASFPPPGSLTLCELNRDLITVDALSDDRADQTYGKHLGLVFSPVPFQPPPPPLENDVPEQEATAVVTVSRKGPLAVLQGLVNECLRRLVYPNDVHLLPEVNLQEVSWHLNRHIIAFISGPNQVLVHDYEDPDGKDSTILTNESQRDVKVLEWRPNGGRMLAVGCKSGICIWSASYPGNTASARSGTISYVGSLSRGSGIRYLLVDFLRSQNGEHVSALTWSPDGRYLASASYESSSFTVWDVAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSSGFVKCATWDPDGRMVLLAFSKSSTLGSVHFASKPPSLDTHLLPVELPEILSLTGSQGIEKIEWDSSGERLAVSFKGGDDVYGGLIAIYDTRRTPLISTSLIGFIRGPGENPKPISFSFHGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03576 447 Pfam WD domain, G-beta repeat 215 242 IPR001680 GO:0005515
Vivi6g03576 447 PANTHER ALADIN/ADRACALIN/AAAS 2 443 IPR045139 -
Vivi6g03576 447 SUPERFAMILY WD40 repeat-like 105 431 IPR036322 GO:0005515
Vivi6g03576 447 FunFam Aladin isoform A 208 436 - -
Vivi6g03576 447 Gene3D - 83 254 IPR015943 GO:0005515
Vivi6g03576 447 Gene3D - 255 437 IPR015943 GO:0005515
Vivi6g03576 447 SMART WD40_4 244 283 IPR001680 GO:0005515
Vivi6g03576 447 SMART WD40_4 133 173 IPR001680 GO:0005515
Vivi6g03576 447 SMART WD40_4 342 386 IPR001680 GO:0005515
Vivi6g03576 447 SMART WD40_4 201 242 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03576 Vivi-Chr6 129093563 129100588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03576 216 319 Miscellaneous Gene Families AT5G08390 28.571 8.74e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03576 K14320 - gmx:100808599 725.317