Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03549 ATGGCGCTATCATCTTCTTCATCACCATGTTCATGCTTTTCACCTCCTACAACACTTCTTCCTCGTCCCCGCCTTTTCACTACTCAATTCCACTGTAACATCAAACCCTACAGCCATTTCCGGCGAACAATTTCCGCCACCGCCACTGTATCCACTACTTCTTCCACTCCGCCACTCCACTCTACCACCAGAGAAGGACTCGAAGCCGTTAACATTGCCGAAGACGTCACTCAGTTGATTGGGAATACACCGATGATATATCTGAATAACGTTACAGAAGGATGTGTAGCAGACGTTGTTGCTAAACTCGAATCCATGGAGCCTTGCAGAAGTGTCAAGGACAGAATTGGGTATAGCATGTTGGCTGATGCCGAGGAGAATGGAGCAATTACGCCGGGAAAGACTGTTTTAGTTGAACCAACAACTGGAAATACCGGACTTGGCCTTGCTTTTGTTGCAGCAACTAAGGGGTATAAACTGATAGTCACAATGCCTGCCTCCGTTAATATTGAGAGGAGAATTCTTTTACGCACGTTTGGGGCAGAGGTTGTGTTGACTGATGCCGAGAAGGGTCTGAAAGGAGCCATTGACAAAGCTGAAGAAATTGTCTACGACACGTCCAATGCTTACATGTTTCGACAGTTTGATAATAAGAATAATACAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGTAATGTTGATGTATTGGTTGCTGCTATTGGAACTGGAGGCACTGTTACAGGCACAGGACGGTATCTGAAATTGATGAACAAAGAAATAAAGGTGGTTGGGGTGGAGCCTGCAGACCGAAGTATAATCTCCGGAGACAATCCAGGTTTCATACCAAGCATTTTGGATGTCAAACTGCTCGATGAGGTTGTCAAGGTTACAAATGTTGAAGCAATTGAAATGGCAAGGAGATTAGCATTGGAAGAAGGATTACTGGTTGGGATTTCTTCAGGAGCAGCAGCAGCAGCTGCAATAACTTTAGCAAGACGGCCTGAAAATTCTGGGAAACTTATAACGGTTATTTTTCCTAGTTTTGGTGAGAGGTATCTTTCCACTGAACTCTTCAATTCCATCTATGAAGAGGTTAAGAAAATGTAA 1128 0.4433 MALSSSSSPCSCFSPPTTLLPRPRLFTTQFHCNIKPYSHFRRTISATATVSTTSSTPPLHSTTREGLEAVNIAEDVTQLIGNTPMIYLNNVTEGCVADVVAKLESMEPCRSVKDRIGYSMLADAEENGAITPGKTVLVEPTTGNTGLGLAFVAATKGYKLIVTMPASVNIERRILLRTFGAEVVLTDAEKGLKGAIDKAEEIVYDTSNAYMFRQFDNKNNTKIHFETTGPEIWEDTMGNVDVLVAAIGTGGTVTGTGRYLKLMNKEIKVVGVEPADRSIISGDNPGFIPSILDVKLLDEVVKVTNVEAIEMARRLALEEGLLVGISSGAAAAAAITLARRPENSGKLITVIFPSFGERYLSTELFNSIYEEVKKM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03549 375 FunFam Cysteine synthase 193 361 - -
Vivi6g03549 375 Gene3D - 78 361 IPR036052 -
Vivi6g03549 375 Gene3D - 114 216 IPR036052 -
Vivi6g03549 375 NCBIfam cysteine synthase 77 365 IPR005856 GO:0004124|GO:0006535
Vivi6g03549 375 NCBIfam cysteine synthase A 77 365 IPR005859 GO:0004124|GO:0006535
Vivi6g03549 375 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 72 367 IPR036052 -
Vivi6g03549 375 FunFam Cysteine synthase 107 186 - -
Vivi6g03549 375 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 102 120 IPR001216 GO:0006535
Vivi6g03549 375 Pfam Pyridoxal-phosphate dependent enzyme 76 351 IPR001926 -
Vivi6g03549 375 CDD CBS_like 81 361 - -
Vivi6g03549 375 PANTHER CYSTATHIONINE BETA-SYNTHASE 72 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03549 Vivi-Chr6 128533603 128539084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03549 68 375 Miscellaneous Gene Families AT3G03630 79.221 2.04e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03549 K22846 - gmx:100816974 536.184