Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03545 ATGGGCGCCGCCGCCCCAAGGTTCATCTTTATCCTCCGCCACAACCTCCGCCTCTTCCCTCCCACCTTCTCTTCCCATTTTCGCCGCCACCACCGCGCTATCTTTACTTCCACTTCCTCTCCATTTTCCTCACTAACTCCTTCTCCTTCTCCTTCTCTCACACCCAAACTCAAACTCAAACCCAAAGCCTCCCAACACTTTCACACCCAACCTTCATCTTCCCTCGGTGGAACCCACCACCCATGGCCCGAATTTTCCAGATTTTTCGCACACATCTCCTCCGCCGGCTACACATCCACTATTCCTCCCGCCGATTCCTTTCTCCCTCCCGCTGAATTGTCGCAGGCCGAGGTCTGTTCCTGCTTGGCTTTCGCCCGAGATAGACCCAACCTTCTCAGGTTGCTTTCTATGAGAGACGTAGCTGTTGTGGTTGAACATGGCACCCCCTTTCTGTTCCCGGATTCTGAGGATTCCGTTTCGAAGATGAAGTCTTTTGTATTCAACGGTGACTCCACTGCCTTGGACACTAATAAAGCCAATATGGTTGATCTAATGAAATTTCTTCTGAGTTACGCAAGCAACTGCTCGGTCTCGTCAGAAAGGAACAGTCTCTATAACAGAAATCTTGTTGAATCCTCCGTCCGAAACCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGACCTAACTCTTTTGATTCAGTGCAAAATCAAATCCCTGCCGGTAGATTTGGGCATACAGCGCCTCCTGGACAAAACATTGAAATGAAAAGGGGTGATTGGATTTGCACAAGGTGTAATTTTATGAATTTTGCAAGAAATGTTAAATGTCTTGAATGCGAGGAAGCAAGGCCAAAAAGACAACTGACGGGAGGAGAATGGGAATGTCCTCAGTGTGATTTCCATAATTATGGGAGGAATGTAACTTGCTTACGTTGTGATTGCAAGAGGCCTGGACAAATATCTTTGGGTTCCACCGATACCACGTCACATCCAGGGTATGGTAACGGAAACAATTATAATCCTTCAAATATTGATGCTAGGTTAGCCGCTAATGAAGAAAAGGCTCAACGTTGGTTTAACAAGGTTTCTCAACTGGATAACAATTCTGATATTAACAGTGTGGCAGACGATGAAGATTTTCCGGAAATAATGCCGTTAAGGAAAGGAGTTAATAGATTTGTTGTAAGCACAAGGAAAACTCCATTAGAGAGGAGGTTGACCAATGCTCAATACAAGAGAAACTTGGGAAATAATGATACTCCTGGAGTTGAGGATTTTAGATCTGGGGAATCAGTCAAGTCTCACAATACTCTGGATGATATTCTAGGTCGCTCAACCGGCCTTCCTCAATCTGACCATAAAAATATGGGTGCTGAGCAAAATTTTAGTAGCGAAAGGTCACCTTCAATTGGTAGTAATACTTCCCATTTCAACGATGTTAAAGGGAGTAACACTCCTACTCTTCCCCCCTTTCCATCATATGCCAGTACTGGTGACACTGACCGGACACAACTTTCTAATAACTCTTCAATTGAAAATATCATTAAGGATAAGGAGAAAGAGCAAGCTGTAAAATCGGATAGATGGTTTAGAAAGATTGCGGAGATGAATGATGTTCAAGATATAACAAGTGCAATATCCGATGATGATTTCCCTGAAATAATGCCGATGCGTAAAGGAGAAAACAGATTTGTTGTTAGCAAGAAAAAAGACCGGTCCTTGACAACACCGGCATATAAGAGGCGTTTGGCCATGGAGCAATCTGGAAATACCAACTTTGTCCCTTTCGTACCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGCCACAGGCAGATGGAACAGACTCAACAGATAGGTCCAATGTTGAATCATCCTCAGTACCTGAACCGGCTGAGATGTCGAGTGACGCTAGAGCTAGACCCGAACAGAGGCCAGAACCTACTGATCAGAGTTCAAATAATAATAATAATCATGTTATCTCTAGCTATGGAGCTACAAGCAGTGGAAATTCAAACCTGAGTTTCAGTCAAGATAGTGTGCCAAATTTGACAGAGAAGTCATCCACAAGTTCGGCATCTGAGAACCATAGTGTTGGAACAGAATGGACAGGAAAGAGTTTAGAGGGGTCGGCGGTCAGGGAACCGGATCCTTTAGACATGTCAGAGGAGGCGAAAGCAGAGAGGTGGTTTCGTCGAGTTGCTCAGATAAAAGATATTTCTGAGCTCAGTCAGATTCCAGACGAAGATTTTCCCTCAATAATGCCTATGCGTAAAGGGGTGAACAGATTTGTTGTGAGTAAGAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAGTATAGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTTAAGAAAGAAAATGAAGGTAGCTGA 2415 0.4422 MGAAAPRFIFILRHNLRLFPPTFSSHFRRHHRAIFTSTSSPFSSLTPSPSPSLTPKLKLKPKASQHFHTQPSSSLGGTHHPWPEFSRFFAHISSAGYTSTIPPADSFLPPAELSQAEVCSCLAFARDRPNLLRLLSMRDVAVVVEHGTPFLFPDSEDSVSKMKSFVFNGDSTALDTNKANMVDLMKFLLSYASNCSVSSERNSLYNRNLVESSVRNLFGELFKLSYSAPGPNSFDSVQNQIPAGRFGHTAPPGQNIEMKRGDWICTRCNFMNFARNVKCLECEEARPKRQLTGGEWECPQCDFHNYGRNVTCLRCDCKRPGQISLGSTDTTSHPGYGNGNNYNPSNIDARLAANEEKAQRWFNKVSQLDNNSDINSVADDEDFPEIMPLRKGVNRFVVSTRKTPLERRLTNAQYKRNLGNNDTPGVEDFRSGESVKSHNTLDDILGRSTGLPQSDHKNMGAEQNFSSERSPSIGSNTSHFNDVKGSNTPTLPPFPSYASTGDTDRTQLSNNSSIENIIKDKEKEQAVKSDRWFRKIAEMNDVQDITSAISDDDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRLAMEQSGNTNFVPFVPFPPDYFAKKDKPQADGTDSTDRSNVESSSVPEPAEMSSDARARPEQRPEPTDQSSNNNNNHVISSYGATSSGNSNLSFSQDSVPNLTEKSSTSSASENHSVGTEWTGKSLEGSAVREPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKKENEGS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03545 804 MobiDBLite consensus disorder prediction 441 478 - -
Vivi6g03545 804 ProSitePatterns Zinc finger RanBP2-type signature. 263 282 IPR001876 -
Vivi6g03545 804 SMART zf_4 294 318 IPR001876 -
Vivi6g03545 804 SMART zf_4 261 285 IPR001876 -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 619 635 - -
Vivi6g03545 804 ProSitePatterns Zinc finger RanBP2-type signature. 296 315 IPR001876 -
Vivi6g03545 804 SUPERFAMILY Ran binding protein zinc finger-like 253 288 IPR036443 -
Vivi6g03545 804 Pfam Zn-finger in Ran binding protein and others 294 320 IPR001876 -
Vivi6g03545 804 Pfam Zn-finger in Ran binding protein and others 260 287 IPR001876 -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 650 708 - -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 607 725 - -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 39 53 - -
Vivi6g03545 804 PANTHER ZINC FINGER PROTEIN 50 416 - -
Vivi6g03545 804 ProSiteProfiles Zinc finger RanBP2 type profile. 259 288 IPR001876 -
Vivi6g03545 804 Gene3D - 290 322 - -
Vivi6g03545 804 Gene3D - 252 289 - -
Vivi6g03545 804 ProSiteProfiles Zinc finger RanBP2 type profile. 292 321 IPR001876 -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 416 478 - -
Vivi6g03545 804 MobiDBLite consensus disorder prediction 39 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03545 Vivi-Chr6 128484206 128488632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03545 120 325 EF-hand Containing Proteins AT1G55040 37.339 2.17e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03545 - - mtr:25498993 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03545 6 128484206 128488632 Vivi6g03545 6 128484206 128488632 ECH